Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., Prophage integrase IntA from Acinetobacter radioresistens SK82

 Score =  157 bits (398), Expect = 4e-43
 Identities = 131/405 (32%), Positives = 192/405 (47%), Gaps = 44/405 (10%)

Query: 21  RLSDGGNLYFCVR-PSNSRSWQFRY---KRPGQDKITY-----LSFGTYPDMSLAEAREK 71
           R S GG    C+    NSR W  R    KR  +D         +  G YP++SLAEAR K
Sbjct: 21  RHSVGGVDGLCLNVEGNSRVWILRAVVGKRLDKDGKLKPHRRDIGIGPYPEVSLAEARAK 80

Query: 72  ALEARKQLADGIDPQLAKEEQKAKTITEQ--NATFKFVAEQWKATKEGQIKEKTLEGNWR 129
           A E R Q+  GIDP   K+EQ  K   ++  + TF   A+   A K  ++K +   G W 
Sbjct: 81  ATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMECAKVVIANKTRELKNEKHIGQWT 140

Query: 130 K-LELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVNSGVI 188
             LE Y +P LG I +  +T       LRPI  +   ET KR    +  I +YA   G  
Sbjct: 141 STLETYIYPTLGDISIGTITKVDIAEVLRPIWIKKN-ETAKRIRGRIETIFDYAKAMGYF 199

Query: 189 HA-NPL---AGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQH------VTRFLIEW 238
              NP      +  +F   K    +  +PH    L        IQH      ++   +E+
Sbjct: 200 EGDNPAEWKGNLEPIFGNIK----QESRPHP--SLPYEQVAGFIQHLRQKKGISPKALEF 253

Query: 239 QLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGH 298
            + T  R  E  GA+W+EID  NK+WIIPKERMK N+EH VPL+ + + +L++I+  +  
Sbjct: 254 AILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEAVNLLKSIQEYTQP 313

Query: 299 REFIFPSSRNPKVPTD------------SETANKALGRMGFKDR--TTAHGLRA-LASTT 343
           ++FIFP+ RN  + +D             +     LG +  K     T HG R+     +
Sbjct: 314 QDFIFPAPRNGAMLSDMSLTILIKRMHEQKLKENGLGYIDPKQNRVITTHGFRSTFRDWS 373

Query: 344 LNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSE 388
            ++  +  +V E  LAH   +++  AY R  YL+ R+ LM+ W+E
Sbjct: 374 ADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMADWAE 418