Pairwise Alignments

Query, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Prophage integrase IntS from Acinetobacter radioresistens SK82

 Score =  145 bits (365), Expect = 3e-39
 Identities = 113/408 (27%), Positives = 191/408 (46%), Gaps = 24/408 (5%)

Query: 1   MANNLTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTY 60
           M N+L  +Q+   K KDK+YR++D   L   VR + S+ W++RY+     K+  L+ G Y
Sbjct: 1   MLNDLKIKQL---KAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKM--LTIGPY 55

Query: 61  PDMSLAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIK 120
           P++SL+ AR+K  E R  LA  +DP   +++     +     TFK ++ ++    +    
Sbjct: 56  PEISLSYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHS 115

Query: 121 EKTLEGNWRKLELYAFPKLGSIPVSKLTAPMAIAAL-----RPIESQGLLETVKR--TAQ 173
           ++  E   R  +    P +G+ P+ ++ +      L     R  +S+     VK     Q
Sbjct: 116 QEWYENRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQ 175

Query: 174 LMNEIMNYAVNSGVIHANPLAGIRDVFKKHKVVHMKALQPHEMHDLIRTVATANIQHVTR 233
           +  E+M YA+ +  I  +P   +R   ++  V H   L+  +   ++  +        T+
Sbjct: 176 ICAEVMQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQ 235

Query: 234 FLIEWQLHTMVRPNEASGARWEEIDMVNKLWIIP----------KERMKMNREHVVPLTA 283
             +   L++M+R  E   A+   +++ +    IP          K  MK NR HVVPL+ 
Sbjct: 236 NALRTALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLST 295

Query: 284 QTLAILEAIKPISGHREFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTT 343
           Q L I++    +     ++FP      +     T N+AL  MG     T H  RA AST 
Sbjct: 296 QMLEIIKEQLQLYPDSIYLFPGDDGISM-LGKNTLNEALVNMGL-GHITMHDFRATASTY 353

Query: 344 LNEQGFEPDVIEAALAHTDKNQIRKAYNRTDYLDSRRKLMSWWSEHIE 391
           LNEQ +  D IE  LAH D +  R +YN   +L  RR++M   ++ I+
Sbjct: 354 LNEQNYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTID 401