Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1029 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

 Score =  527 bits (1358), Expect = e-153
 Identities = 315/1014 (31%), Positives = 536/1014 (52%), Gaps = 14/1014 (1%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  R+ +  L+A++++ G +++  LGR EDP FVI+  V+   +PGAT +E   
Sbjct: 6    NLSAWALKHRSVIIYLMAISVVAGVMAFRNLGRAEDPTFVIKTMVVQANWPGATLEETFR 65

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VT+ +E  +Q   +L  ++S +  G +  TV + L+ + ++A++  +W  +R+ +AD +
Sbjct: 66   QVTERLERKLQETPQLNFLESYTKPGVT--TVFVHLKGSATAAEVPDIWYHVRKSIADIR 123

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
              LP G      ND+F D + + Y  T +GFS ++L+DYV+  R EL+ VP V+K   L 
Sbjct: 124  HTLPQGIVGPFFNDEFGDTFGIIYGFTADGFSHRELRDYVEEARSELLHVPDVSKIEILG 183

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
             Q E IFIE S + +A  G+  + VL  L  Q++V  +G +   +  I +      +S A
Sbjct: 184  AQDERIFIEFSMQELASLGIDRQAVLSALAAQNIVRPSGEIQTGKENISIRVSGAFASEA 243

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
            D+ N+ +AV  N  ++RL DIA I RG+ +P   + R NG+ AIG  I+   GG+++ MG
Sbjct: 244  DIANVNLAV--NGRLIRLADIATIRRGFADPPQPMFRVNGKDAIGLAIAMRDGGDILAMG 301

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
              +   +  + +  P+G+D  +++ Q+ +V+++++ F+++L  AV I+ VV  + +GVR+
Sbjct: 302  ANIDRAMTRILANMPVGIDATLVADQAVTVKSAISEFMESLWQAVGIILVVSFIALGVRA 361

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G I+   + LT+A    +M +  I MQRISLGALIIAL ++VD+A+  TD  L R     
Sbjct: 362  GAIVALAIPLTLAIVFALMQLAHIDMQRISLGALIIALALMVDDAMTTTDATLTRL--AA 419

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              D     S    A    +L GT+V +  F  +G + S  GEY  +LF V+  ++ +SW+
Sbjct: 420  GDDPPTAASYAFKAYAAAMLAGTLVTVAGFVPVGFAASSAGEYTFTLFAVVAIALLVSWI 479

Query: 482  FAVTVTPMLCHDFLRV----KAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVA 537
             AV   P+L    LR     K P   A P  ++  Y+A L   L  R V+ A+  G  V 
Sbjct: 480  VAVLFAPLLQVLILRAPAKDKIPDPNAPPKGVMGMYRAFLILCLRLRWVTLAVTAGLFVL 539

Query: 538  AVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFI 597
            +V     IP  F P S RP+ +VD+  PQ + I  ++ V  + +K +     +   ++++
Sbjct: 540  SVLALPLIPRQFFPSSDRPELLVDLASPQNASIYASQSVAEAFDKVLANDPDVARWSTYV 599

Query: 598  GGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFML 657
            G G +RF L    +  N  + Q +I   D      L  +L+  L   +P    ++    L
Sbjct: 600  GRGAIRFYLPLDVQLPNDFFAQSVIVAKDVAARERLRVKLEKVLATDFPQLVARISPLEL 659

Query: 658  GRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEA 717
            G   G  ++    GP+   +R +A     +M  +P +  V  +W +    +       EA
Sbjct: 660  GPPVGWPVQYRVSGPEIEKVRAIAFDLAKVMAENPQVETVNYNWIEPARQVSIRVDQDEA 719

Query: 718  QRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQA 777
            + LGL+T +++  +   L+G+ V   R+   L+ ++ RA + ER    ++   +V     
Sbjct: 720  RLLGLSTAQLAGVLNTVLSGQPVTQVRDDIYLVNVVARATDEERVSLSSLATLQV-PLPG 778

Query: 778  GRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIE-- 835
            GR +P+SQ+          A+ RR +R+PT+ VQ+D   GV+       +  KIE +   
Sbjct: 779  GRTVPLSQIATFEYGQDYPAIWRR-DRVPTLTVQSDVKRGVLPESVVEKLDPKIEALRRT 837

Query: 836  LPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVV 895
            LPAGY +   G  + S  +   +    P     M   ++F   + ++ +++   AP  ++
Sbjct: 838  LPAGYAITTGGTVEESASSLASVVAVVPVMLLLMFTVLMFELKSFQRLVIVLSVAPLGLI 897

Query: 896  GVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSR 955
            GV   L+    P  F+AILG L+LIGM+ KNA++L+ Q +A+  AGK  + A++  +  R
Sbjct: 898  GVVGALLLSGRPLGFVAILGVLALIGMITKNAVILIGQIEADRAAGKTVWDAVVSGSSMR 957

Query: 956  ARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLF 1009
             RP++L A +T+LG+ P+    F+  MA  IM GLL  T+LTL+ +P  Y   F
Sbjct: 958  FRPIMLTAVSTVLGMIPIAPTVFWGPMAFAIMGGLLVGTLLTLIFLPALYVAWF 1011