Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., Nickel and cobalt resistance protein CnrA from Xanthobacter sp. DMC5

 Score =  546 bits (1407), Expect = e-159
 Identities = 332/1027 (32%), Positives = 546/1027 (53%), Gaps = 28/1027 (2%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++R+ +  R      I L    G  SY  LGR EDP F I+  V+   +PGATA E+  
Sbjct: 25   NLSRWAITHRALTLFAILLLGAAGAYSYFNLGRAEDPSFTIKVMVVQAAWPGATASEMQA 84

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +V D IE  +Q+L  L  V+S S  G S   V++ L     + +++ +W ++R+KV+D +
Sbjct: 85   QVADPIEKKLQSLPHLDRVESYSRPGVS--FVQVFLRDNTPAKEVKDLWYQVRKKVSDVR 142

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
              LP G      +D++ DVY+  Y ++G+G +  +L+   + +R+ L+ VP V K   + 
Sbjct: 143  GDLPAGVIGPGFDDEYGDVYSALYILSGQGAAPAELKRQAELIRQRLLRVPNVEKVDLIG 202

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
            E+ E I+IE S  R+A  G++ ++V   + +Q+ V   G+VD +  RI +      + + 
Sbjct: 203  ERPEKIYIEFSHARLANLGITPQQVFDSVARQNAVVAGGAVDTRSDRINLRVTGAFTGVE 262

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
             +  + VAV  N A++RLGDIA + RGY +P + LMR +G  A+G G+S   G N++ +G
Sbjct: 263  AIAEVPVAV--NGALLRLGDIATVKRGYEDPPAFLMRQHGLPALGIGVSMAQGANILTLG 320

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
            + +K  +AE  ++ P G+D+  ++ Q   V  SV  F+   + A+ IV VV  L +G R+
Sbjct: 321  EGLKTAMAEATAELPHGIDVTQVADQPHIVGESVGEFLKTFLEALVIVLVVSFLSLGFRT 380

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   + L +A    +M    + + RI+LGALIIALG+LVD+AI+  + ++V+ ++  
Sbjct: 381  GIVVALSVPLVLAIVFLIMFSAGMDLHRITLGALIIALGLLVDDAIIAIEMMVVKMEE-- 438

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              D+    +    +T +P+L GT+V    F  +G + S  GEYAG +FWV+  ++  SW 
Sbjct: 439  GWDRMSAATFAWTSTAFPMLTGTLVTAAGFLPVGFAKSSSGEYAGGIFWVVGIALIASWF 498

Query: 482  FAVTVTPMLCHDFL---RVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVAA 538
             AV  TP L    L   +      E    +L    +  L++ L HR     M++GT V  
Sbjct: 499  VAVIFTPYLGTVLLPDMKKAGGHHEMHDGRLYRMLRGTLEFCLRHRF----MVIGTTVVM 554

Query: 539  VWGAQ----FIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNIT 594
              G+     F+   F P S RP+  +++ LP+G+ I  TE      E  V +   +   T
Sbjct: 555  FAGSVVAFGFVQQQFFPTSTRPELFLEIRLPEGTSITVTEATAKKAEALVGEDPDVATST 614

Query: 595  SFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNEL-DAKYPDASIKVW 653
            +++G G  RF L  +P   NP++ Q++I   D      L   L  EL +    +A ++V 
Sbjct: 615  TYVGRGAPRFWLGLNPVLPNPNFAQIVIVAKDVAARERLKARLDAELAEGALSEARVRVD 674

Query: 654  KFMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYS 713
            +F+ G   G  ++    GPD   +R +AE+ + +M +D ++I    +W +QV  +     
Sbjct: 675  RFVFGPPVGFPVQFRVVGPDPIAVRDIAEKVRLVMASDTDMIDPHLNWGEQVKSITLTVD 734

Query: 714  AQEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENER---HHERAIENS 770
               A+ LG + ++I+  +   L G  +   REGN LI +M RA   ER    H  A+   
Sbjct: 735  QDRARALGTSPRDIAETLQTLLQGYAITQLREGNLLIDVMARAVPEERVDLEHLAAL--- 791

Query: 771  EVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREK 830
               + + G  +P+ Q V  +   +++ +L R +R   + V+ D   GV   D    +  K
Sbjct: 792  -TVTTRNGLAVPLGQ-VARIGYAHEEPILWRRDRDLVLTVRGDVRDGVQPPDVTTRLLPK 849

Query: 831  IEQI--ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWM 888
            + Q+  ELP GY +   G  + S  AN  LA   P     M+  ++    +  +  ++  
Sbjct: 850  LAQLKAELPPGYRIETGGSIEESAKANASLAAVFPVMIIVMLTLLMIQLQSFSRLALVLA 909

Query: 889  TAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAI 948
            TAP  ++G    L+    PF F+A+LG ++L GM+++N ++LVDQ D +IR G   + AI
Sbjct: 910  TAPLGLIGAAAALLIAHRPFGFVALLGLIALAGMIMRNTVILVDQIDHDIRDGATPHRAI 969

Query: 949  IDAAVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVL 1008
            ++A + RARPV+L A   +LG+ PL    F+  MAVTIM GLL AT+LTL+V+P  YA  
Sbjct: 970  VEATLRRARPVVLTALAAVLGMIPLAESVFWGPMAVTIMGGLLVATVLTLLVVPALYATW 1029

Query: 1009 FRVKVAK 1015
            FRVKV +
Sbjct: 1030 FRVKVTE 1036



 Score = 53.9 bits (128), Expect = 6e-11
 Identities = 70/336 (20%), Positives = 134/336 (39%), Gaps = 23/336 (6%)

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
            EQ ++I + +  +R    G S   + + LQ          +    + I V+ ++      
Sbjct: 724  EQVKSITLTVDQDRARALGTSPRDIAETLQTLLQGYAITQLREGNLLIDVMARAVPEERV 783

Query: 242  DLTNLQVAVGS--NNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVE 299
            DL +L     +  N   V LG +A I   + EP  +L R +    +        G    +
Sbjct: 784  DLEHLAALTVTTRNGLAVPLGQVARIGYAHEEP--ILWRRDRDLVLTVRGDVRDGVQPPD 841

Query: 300  MGDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGV 359
            +   +  +LA+L+++ P G  +       +S +A+ +     L A   ++ +V+L  + +
Sbjct: 842  VTTRLLPKLAQLKAELPPGYRIETGGSIEESAKANAS-----LAAVFPVMIIVMLTLLMI 896

Query: 360  RSGVIIGFVLLLTVA-----GTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVL 414
            +        L+L  A     G    +LI       ++L  LI   GM++ N +++ D + 
Sbjct: 897  QLQSFSRLALVLATAPLGLIGAAAALLIAHRPFGFVALLGLIALAGMIMRNTVILVDQI- 955

Query: 415  VRFQQEPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAI-GLSPSDMGEYAGSLFWVIL 473
                     D       +V AT   L     V + A +A+ G+ P     + G +   I+
Sbjct: 956  ----DHDIRDGATPHRAIVEAT---LRRARPVVLTALAAVLGMIPLAESVFWGPMAVTIM 1008

Query: 474  YSMFLSWVFAVTVTPMLCHDFLRVKAPTKEAKPSKL 509
              + ++ V  + V P L   + RVK   +E  P+ L
Sbjct: 1009 GGLLVATVLTLLVVPALYATWFRVKVTEEETAPAAL 1044