Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

 Score =  529 bits (1362), Expect = e-154
 Identities = 319/1022 (31%), Positives = 541/1022 (52%), Gaps = 19/1022 (1%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  R  V  L+ L  + G +SY KLG+ EDP F  +  VI T +PGATAQEVS 
Sbjct: 4    NLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVSR 63

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VT+ IE  +    E + + S S  G S+VT   +   +  SAQ+ ++W ++R+K++D +
Sbjct: 64   QVTERIEKKLMETGEYERIVSFSRPGESQVTFIAR--DSMHSAQIPELWYQVRKKISDIR 121

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
            + LPP       ND+F   +   YA+TG+GF    L+DY D ++ +L  V  V K   L 
Sbjct: 122  QTLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLG 181

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
             Q E I+IE+S+ ++A  GL +  V Q LQ+Q+ V+ AG  +    R+ +    N  ++ 
Sbjct: 182  LQDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVE 241

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
            ++ N  + VG      R+GD+A+I RG+ +P +  MRY G  AIG  ++   GG+++ +G
Sbjct: 242  EIRNFPIRVGDRT--FRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLG 299

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
             A++   A L+   P GM+L  +S Q  +V+ SV  F+  L  A+AIV +V    +GVR+
Sbjct: 300  KALEGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRT 359

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   + L +A T   M    I + +ISLGAL++ALG+LVD+AI+  + + ++ +Q  
Sbjct: 360  GMVVALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQ-- 417

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              D+ +  S    +T +P+L GT++    F  I  + S  GEY  S+F V+  ++  SWV
Sbjct: 418  GYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWV 477

Query: 482  FAVTVTPMLCHDFLRVKAPTKEAK-----PSKLVTGY----KAVLQWVLSHRVVSCAMLL 532
             AV   P L    L   A    AK     P    T +    + +++W +  R     + L
Sbjct: 478  AAVVFVPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWCVRRRKTVIVLTL 537

Query: 533  GTLVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITN 592
               + +V   +F+P  F P S R + +VD+ L +G+ +  T   V  +E  + +  GI N
Sbjct: 538  LLFIGSVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDN 597

Query: 593  ITSFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKV 652
              +++G G  RF L    +    S+ Q ++      +   L   L   L+ ++PD   +V
Sbjct: 598  YVAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQFPDLRSRV 657

Query: 653  WKFMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVY 712
             +   G   G  ++    G     +R LA +    +  +P++  V  DW +   ++    
Sbjct: 658  TRLENGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNI 717

Query: 713  SAQEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEV 772
                A+ LG++T  +S  +  +L G +V  YRE N+LI +++R   +ER  E ++  S  
Sbjct: 718  DQDRARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERT-ELSLLPSLA 776

Query: 773  FSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIE 832
                 G+ + +SQ+  +++  +++ ++   NR+PT+ ++AD       A     +   +E
Sbjct: 777  VPTDNGKSVALSQIA-TLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPATLVQQILPTLE 835

Query: 833  QI--ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTA 890
             +  ELP GY L   G  + S      +    P     ++  ++    +  +  ++++TA
Sbjct: 836  GVRAELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTA 895

Query: 891  PFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIID 950
            P  ++GVT+ L+ F+ PF F+A+LG ++L GM+++N+++LVDQ + +I+AG   + AII+
Sbjct: 896  PLGLIGVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIE 955

Query: 951  AAVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFR 1010
            A V R RP++L A   +L + PL    FF  MAV IM GL+ AT LTL+ +P  YA  FR
Sbjct: 956  ATVRRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFR 1015

Query: 1011 VK 1012
            VK
Sbjct: 1016 VK 1017