Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  544 bits (1401), Expect = e-158
 Identities = 324/1021 (31%), Positives = 550/1021 (53%), Gaps = 31/1021 (3%)

Query: 15   WVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSDEVTDVIEGAVQAL 74
            ++++ L ++G + +Y +LG+ EDP F  R  V+ T +PGATAQ+V+++VTD +E  +Q  
Sbjct: 30   YLMVVLMVLGAF-AYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVAEQVTDKLERTLQEA 88

Query: 75   QELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQRQLPPGAGASIVN 134
                +++S S  G S++   IK   +  S ++  VW  +R+K+ D +  LP G      N
Sbjct: 89   PYADKIRSYSKPGESQIIFNIK--DSSKSTEVANVWYTVRKKIGDMRATLPAGVQGPFFN 146

Query: 135  DDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLAEQQEAIFIEMSSE 194
            DDF DVY + YA+  EGFS  +L+   D +R++L+ V  VAK      Q E ++IE+S +
Sbjct: 147  DDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGVQDEKVYIEISQK 206

Query: 195  RMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLADLTNLQVAVGSNN 254
            R+A+ GL    VLQ L  Q+ V  AGS+ + Q  + V      +S+  L ++ +  GS+ 
Sbjct: 207  RLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQLRDMPIR-GSSG 265

Query: 255  AVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMGDAVKARLAELESQ 314
            + ++LGDIA+I RGY +P ++ + + G+  I  G+S   GG+++ +G A+KA  A ++ +
Sbjct: 266  SQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKALKATTATIDKR 325

Query: 315  RPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGV------------RSG 362
             P G+ L  +  Q  SV +SV  F+  LI AVAIV  V ++ +G+            R G
Sbjct: 326  LPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGGRFGWYIDMRPG 385

Query: 363  VIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEPN 422
            +++   + L +A T   M    I + +ISLG+LIIALG+LVD+AI+  + ++VR + E  
Sbjct: 386  LVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE-MMVR-KMEEG 443

Query: 423  ADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWVF 482
             DK +  +   + T  P+L GT++    F  IGL+ S  GEY  ++F V + ++ LSW+ 
Sbjct: 444  YDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTVIALVLSWIV 503

Query: 483  AVTVTPMLCHDFLRVKAPTKEAKP-----SKLVTGYKAVLQWVLSHRVVSCAMLLGTLVA 537
            +V   P L    L+VKA   +A P     S     ++  + W + HR  +    +     
Sbjct: 504  SVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATIGATVLIFAL 563

Query: 538  AVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFI 597
             + G   +   F P+S RP+ +VD++ P+G+     E+V   +EK   ++ G++ ++++I
Sbjct: 564  GIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKRFMEEAGVSTVSTWI 623

Query: 598  GGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFML 657
            G G  RF L         +  QL++   D      L  +L   L  ++P+   +V     
Sbjct: 624  GSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQEFPEVRGRVKLLPN 683

Query: 658  GRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEA 717
            G      ++    GPD  +LR  A++ KA++ ++PN+  V D+W + V V++      +A
Sbjct: 684  GPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWNESVKVIRLEVDQAKA 743

Query: 718  QRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQA 777
            + LG+T+Q I+ A     +G  VG YRE + LI +++R   +ER     I N+ +    +
Sbjct: 744  RALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQAISDIGNAYI-PTSS 802

Query: 778  GRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIEL- 836
            GR IP++Q+   V T ++  ++ R NR   I VQ D   G+  A     +  K+ ++E  
Sbjct: 803  GRSIPLTQIAKPVFT-WEPGVMWRENRDYAITVQGDVIEGLQGATVTTQLLPKLRELEAG 861

Query: 837  -----PAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAP 891
                   GY +   G  + S   +  +    P     +   ++   ++  + L++++T P
Sbjct: 862  WAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLHSFSRSLLVFITGP 921

Query: 892  FAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDA 951
              + GV   L+    PF F+A+LG ++L+GM+ +NA++L+DQ + +  AG  A+ AI+++
Sbjct: 922  MGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDRAAGVPAWDAIVES 981

Query: 952  AVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRV 1011
            AV R RP++L A   +L + PL    F+  MAV IM GL+ AT+LTL+ +P  YA  FRV
Sbjct: 982  AVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTLLALPAMYAAAFRV 1041

Query: 1012 K 1012
            K
Sbjct: 1042 K 1042