Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  527 bits (1357), Expect = e-153
 Identities = 313/1017 (30%), Positives = 544/1017 (53%), Gaps = 17/1017 (1%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  ++ VW L+ ++L+ G  SY  LGR EDP F I+  VI T +PGAT  E   
Sbjct: 6    NLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETLY 65

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VTD IE  ++ L  L   KS +  G S  TV + L     +  +  +W ++R+K+ D +
Sbjct: 66   QVTDRIEKKLEELDSLDYTKSYTRPGES--TVYVYLRDTTKAKDIPDIWYQVRKKIQDIR 123

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
             + P G      ND+F DV+   YA T +G + +QL+DYV+  R E+  VP + K   + 
Sbjct: 124  GEFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVG 183

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
             Q E +++  S+ ++A  G+   +V+Q LQ Q+ VT AG ++A   RI V      +S  
Sbjct: 184  TQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEK 243

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
            DL  + + +  N+   RL DIA+I RGY +P S + RYNGQ AIG  I    GGN+   G
Sbjct: 244  DLQTVNLRI--NDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFG 301

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
             A+K R+ ++    P+G+ +H +S Q+  V+ +V  F   L  AV IV  V  + +GVR+
Sbjct: 302  AALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRA 361

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   + L +A     M    I MQRISLGALIIALG+LVD+A++  + ++ R   E 
Sbjct: 362  GLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRL--EM 419

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
               K+Q  +    +T +P+L GT+V +  F  IGL+ S  GEY  +LF VI  ++ +SWV
Sbjct: 420  GESKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWV 479

Query: 482  FAVTVTPML-CHDFLRVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLV---A 537
             AV   P+L  H     K    EA+P ++   ++  L W + +R ++   ++GT+V    
Sbjct: 480  VAVFFAPVLGVHILKGDKLKAHEAEPGRVGRAFEGGLLWCMRNRWLT---IIGTVVLFAL 536

Query: 538  AVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITSFI 597
            A++  +F+   F P S RP+ +VD+ LPQ + I  T +VV   E  +     + + +++I
Sbjct: 537  AIFCMRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYI 596

Query: 598  GGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFML 657
            G G +RF L    + +NP Y QL+I    + +   ++  LQ  L  ++      V    +
Sbjct: 597  GQGAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGTNVQSLEM 656

Query: 658  GRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEA 717
            G   G+ I+    G D   +R+ A +   ++  + ++  +  DW +   VL+   +  +A
Sbjct: 657  GPPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKA 716

Query: 718  QRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQA 777
            ++LGL++++++  +   ++G  +    +   L+ ++ RA ++ER     ++N ++ +   
Sbjct: 717  RQLGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPN- 775

Query: 778  GRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQI--E 835
            G  IP+     +V    +  L+ R +R PTI ++A     +   D    ++ KI++   +
Sbjct: 776  GTSIPLLSFA-TVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASK 834

Query: 836  LPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVV 895
            LP G+E+   G  + S  A   +    P     M   ++   +++++  ++   AP  ++
Sbjct: 835  LPVGFEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLI 894

Query: 896  GVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSR 955
            GV + L+   TP  F+AILG L+L G++++N+++LV Q D     G   + A+++A   R
Sbjct: 895  GVVLALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHR 954

Query: 956  ARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
             RP+LL A    LG+ P+  + F+  MA  ++ G++ AT+LTL+ +P  Y   ++++
Sbjct: 955  RRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIR 1011



 Score = 54.3 bits (129), Expect = 4e-11
 Identities = 89/438 (20%), Positives = 169/438 (38%), Gaps = 65/438 (14%)

Query: 622  IDIDDYTKIAPLVGE------LQNELDAK-YPDASIKVWKFMLGRGGGKKIEAGFKGP-- 672
            +D  DYTK     GE      L++   AK  PD   +V K +    G  +  AG +GP  
Sbjct: 78   LDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG--EFPAGIQGPGF 135

Query: 673  ----------------DSHVLRQL---AEQAKAIMHNDPN-----LIAVQDDWRQQVPVL 708
                            D   LRQL    EQA+A + + PN     L+  QD+      VL
Sbjct: 136  NDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGTQDE------VL 189

Query: 709  QPVYSAQEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAP---------EN 759
               +S ++   LG+  +++  A+         G+   G + I +               N
Sbjct: 190  YLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKDLQTVN 249

Query: 760  ERHHERAIENSEVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVM 819
             R ++R    +++   + G   P S +              R N    I +      G  
Sbjct: 250  LRINDRFFRLADIADIERGYVDPPSPMF-------------RYNGQTAIGLAIGMKAGGN 296

Query: 820  TADAFNNVREKIEQI--ELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMF 877
                   ++++++Q+  +LP G  +    +         G   SA +    ++LAV F+ 
Sbjct: 297  IQVFGAALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVS 356

Query: 878  NALRQPLVIWMTAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAE 937
              +R  LV+  + P  +  V + +       + +++   +  +G++V +A++ V+     
Sbjct: 357  LGVRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTR 416

Query: 938  IRAGKEAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILT 997
            +  G+    A   A  S A P+L G   T+ G  P+ ++          +F ++   ++ 
Sbjct: 417  LEMGESKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIV 476

Query: 998  LVVIPLFYAVLFRVKVAK 1015
              V+ +F+A +  V + K
Sbjct: 477  SWVVAVFFAPVLGVHILK 494