Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., Cation/multidrug efflux pump from Enterobacter asburiae PDN3

 Score =  759 bits (1961), Expect = 0.0
 Identities = 414/1023 (40%), Positives = 621/1023 (60%), Gaps = 13/1023 (1%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            MDI+R  +     VW+ I L  IGG  + L +GR EDP F I+ AV+VT YPGA+AQ+V 
Sbjct: 1    MDISRQFINNPVRVWLTILLLGIGGIFALLNIGRLEDPAFTIKTAVVVTHYPGASAQQVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
            +EVT  +E A+Q L  L  V S+S  G S++TV I   +   S +L Q+WD+LRR+V DA
Sbjct: 61   EEVTLPLENALQQLPYLDNVSSISSNGLSQITVNIASRY--HSNELPQIWDELRRRVGDA 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
             R  PPG     VNDDF DV+  F+A++G+ FS+ +L  Y + LRREL+L+PGVAK A  
Sbjct: 119  SRLFPPGVVTPFVNDDFGDVFGFFFAISGDEFSNPELVRYAEQLRRELILIPGVAKVAIG 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
                + + I++S  +MA  G+++ ++  +L + ++V+ AG + +    I + P     +L
Sbjct: 179  GAISQQVNIDISLTKMAARGITLNQLSALLSRLNVVSSAGEITSGTESIRLHPTGEFENL 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             +L ++ +      A  RL DIA +SRG  E  + +   NG++A+  G+S + G NV+++
Sbjct: 239  DELADIIITPSGTGAATRLRDIATLSRGLNESPASIYHANGKKAVTMGVSFIPGVNVIDV 298

Query: 301  GDAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVR 360
            G A++A+L ++ +++P G+ + +   Q+  V  SV  FI N + A+AIV  VLL+FMGVR
Sbjct: 299  GHALEAKLNQMSAEKPAGIQIDLFYDQAAEVGHSVNGFIINFLMALAIVIGVLLVFMGVR 358

Query: 361  SGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQE 420
            SG+II F L L V GTL +M +  I +QRISLGALIIAL MLVDNAIV+ +GVL+  QQ 
Sbjct: 359  SGIIIAFSLALNVLGTLLIMYLWGIELQRISLGALIIALSMLVDNAIVIVEGVLIARQQ- 417

Query: 421  PNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSW 480
              +     V+ ++  +  PLLG TV+ I AF+ IGLS    GEY  SLF V+L S+ LSW
Sbjct: 418  -GSPLLTAVNYIIRRSALPLLGATVIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSW 476

Query: 481  VFAVTVTPMLCHDFL--RVKAP--TKEAKP--SKLVTGYKAVLQWVLSHRVVSCAMLLGT 534
              A+T+TP+L   +L     AP  T E+ P   +L   Y+ +L  +L H+  +  ++   
Sbjct: 477  FSALTLTPVLIKWWLFKNDSAPDKTDESDPYDKRLYRAYQRLLNTLLHHKAPALIVMAAL 536

Query: 535  LVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNIT 594
            L A+VWG   +   F P S  P F VD++LP G+DI+ TE++   IEK +  + G+    
Sbjct: 537  LAASVWGFGAVRQNFFPSSNTPIFFVDLWLPYGTDIKWTEKMTGDIEKTINGQPGVETTV 596

Query: 595  SFIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWK 654
            S IG G +RF+LTYS + +  +Y Q+++ +DD   I+ L   +   +   YP  +    +
Sbjct: 597  STIGQGSMRFILTYSGQRQYSNYAQIMVRMDDQRNISALTRHVDEYIARNYPQVNASTKR 656

Query: 655  FMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSA 714
             M G  G   IE   KGPD   LR +A Q   I+  DP   +V++DW+ +  V++P Y A
Sbjct: 657  VMFGPSGDSAIEVRIKGPDPDRLRLIASQVDDILTRDPATGSVRNDWQNRSKVIRPQYVA 716

Query: 715  QEAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFS 774
               + LG+  Q++  A+    +G   G+YREG+DL+P++VR PE+ER     + N  V+S
Sbjct: 717  ALGRELGVDKQDVDNALEMNFSGSRAGLYREGSDLLPVVVRPPESERLDANHLNNVLVWS 776

Query: 775  AQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAP--GVMTADAFNNVREKIE 832
                +YIP+S +V      ++D L+ R +R   + VQ DP P     + D    V+ +I+
Sbjct: 777  QTRQQYIPLSNVVSRFSLEWEDPLILRRDRSRVLTVQTDPDPLSQQTSGDILARVKPQID 836

Query: 833  QIELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPF 892
             + LP GY + W G+ + S +A +GL  + P G+  M +  V MF++++  + IW+T P 
Sbjct: 837  ALSLPHGYSIEWGGDAENSSEAQQGLFTTLPLGYLVMFVITVLMFSSVKNAVAIWLTVPL 896

Query: 893  AVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAA 952
            A++GVT G +    PF FMA++G LSL GM+++N IVLV++ + + +  K+ + AI+ AA
Sbjct: 897  ALIGVTPGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIEQQ-KTQKDQHEAIVYAA 955

Query: 953  VSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRVK 1012
             SR RP+LL AFTT+LG+APLL+D FF+SMAV IMFGL FATILTL+V+P+ YA   R  
Sbjct: 956  TSRLRPILLTAFTTVLGLAPLLLDVFFQSMAVVIMFGLGFATILTLLVLPVIYACFHRKD 1015

Query: 1013 VAK 1015
             AK
Sbjct: 1016 EAK 1018