Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., efflux RND transporter permease subunit from Phocaeicola dorei CL03T12C01

 Score =  615 bits (1585), Expect = e-180
 Identities = 360/1045 (34%), Positives = 578/1045 (55%), Gaps = 39/1045 (3%)

Query: 1    MDIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVS 60
            MDI+++    R  ++ LIA+ L GG  S  ++ + EDPE  ++ A++VT YPGA+A +V 
Sbjct: 1    MDISKWAFRNRNLIYFLIAVLLFGGAYSCYQMSKLEDPEIKVKLAMVVTTYPGASAHQVE 60

Query: 61   DEVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADA 120
             EVTDV+E  ++ +  +  ++S S    S   ++I+L       +++Q WD LR KV+DA
Sbjct: 61   LEVTDVLEKNIRTMGNIDNIESYSYNDLS--LIQIELLSTVPDDEVEQCWDMLRHKVSDA 118

Query: 121  QRQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATL 180
               LP GA   IV DDF +VY +FYA+TG+G SD++L DY + ++RE+  + GV +    
Sbjct: 119  HALLPEGATTPIVKDDFGNVYGMFYALTGDGLSDRELSDYAELVKREVNELEGVDRVELY 178

Query: 181  AEQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSL 240
             ++ E I I +  +RMA  G+    VL  L  Q+  T  G  +    RI V       ++
Sbjct: 179  GKRSECINISLLQDRMANLGVKPAEVLATLNGQNKTTYTGYYENGDNRIRVTVNDKFKTV 238

Query: 241  ADLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEM 300
             D+  + V  G ++  +RL DIA I + Y +P    M Y+ +RA+G  I+  +G +++++
Sbjct: 239  EDIGKMLVQ-GHDDDQLRLSDIARIEKDYEDPTRNEMFYDHERALGILIAASSGSDIIKV 297

Query: 301  GDAVKARLAELESQR-PLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGV 359
            G AV+++L EL++ R P G++ H I  Q + V +S+  F+ NLI +V IV ++L++ MG 
Sbjct: 298  GHAVESKLEELKTGRLPAGVECHKIFYQPERVGSSLGTFVINLIESVIIVVLILMIAMGF 357

Query: 360  RSGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQ 419
            +SG+IIG  L++TV G+   +      MQR+SL A ++A+GMLVDNAIV+ DG+LV    
Sbjct: 358  KSGLIIGISLIITVFGSFLFLYSAGGTMQRVSLAAFVLAMGMLVDNAIVIIDGILV--DL 415

Query: 420  EPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLS 479
            +    + + ++ +   T  PLLG T++ I AF  I +SP   G Y   LF V+  S+ LS
Sbjct: 416  KAGKKRMEAMTAIGRQTAMPLLGATLIAIIAFLPIYMSPDTAGVYTRDLFIVLAVSLLLS 475

Query: 480  WVFAVTVTPMLC----HDFLRVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTL 535
            WV A+   P++     H  +   +  K     K+  G ++ L++ L+HR      ++G L
Sbjct: 476  WVLALIHVPLMADRRLHPAIDTDSTGKRVYKGKIYAGLRSALRFGLAHRWSFVFTMIGLL 535

Query: 536  VAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKDGITNITS 595
            + + +G  ++  GF P+    Q  ++  LP+G++  R  Q +  IE  +  +  IT++T+
Sbjct: 536  LLSAFGYPYMRQGFFPDMVYDQLYMEYKLPEGNNHTRVAQDLKEIETYLKGRKEITHVTT 595

Query: 596  FIGGGGLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKF 655
             IGG   R+ L  S    + SYG+L+ID      +   + E+Q  L   YPDA IK+ ++
Sbjct: 596  SIGGTPGRYNLVRSVANPSLSYGELIIDFTSPETLVEHIDEIQAYLSQAYPDAYIKLKRY 655

Query: 656  MLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQ 715
             L       IEA F GPD  VL QLA+ A+ IM N P +  +  DW  QVPVL   Y   
Sbjct: 656  NL-MFKKYPIEAQFLGPDPAVLHQLADSARTIMENTPEVCLITTDWEPQVPVLTIEYDQP 714

Query: 716  EAQRLGLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSA 775
             A+ LGL+  ++S ++     G  +G + EG     + ++  + +      + N++VFS+
Sbjct: 715  SARALGLSRNDVSLSLLTATGGIPIGSFYEGIHKNNIYLKCLDEKGEPIEDLGNAQVFSS 774

Query: 776  ----------------QAGRY------------IPVSQLVDSVDTVYQDALLRRINRMPT 807
                            +AG               P+ Q+   +D  ++D ++ R N   +
Sbjct: 775  LPSLNGLLNEETMVKLKAGTLSKEDLVESIMGSTPLKQISKGIDIRWEDPVVPRYNGQRS 834

Query: 808  ILVQADPAPGVMTADAFNNVREKIEQIELPAGYELIWYGEYKASKDANEGLALSAPYGFA 867
              VQ  PAPG+ T  A   + E+IE+I+LP GY L+W GE  AS  + + L  + P    
Sbjct: 835  QRVQCSPAPGIETEKARLAIAERIEKIQLPEGYSLVWQGEKIASDQSMKYLFQNFPLAII 894

Query: 868  AMILAVVFMFNALRQPLVIWMTAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNA 927
             MI  ++ +F   R+P++I+   P   VGV   ++     F F+AI+G L LIGM++KN 
Sbjct: 895  LMIAILIMLFKDYRKPIIIFCCIPMIFVGVVAVMLLTGKVFNFVAIVGTLGLIGMLIKNG 954

Query: 928  IVLVDQADAEIRAGKEAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVDPFFKSMAVTIM 987
            IVL+D+   +I  G E   A+ID++ SR RPV++ + TTILG+ PLL D  F S+A  IM
Sbjct: 955  IVLMDEITLQISKGIEPVTALIDSSQSRLRPVMMASLTTILGMIPLLSDAMFGSLAAAIM 1014

Query: 988  FGLLFATILTLVVIPLFYAVLFRVK 1012
             GLL +T++TL+ IP+ YA+ F+++
Sbjct: 1015 GGLLCSTLITLLFIPILYALFFKIR 1039