Pairwise Alignments

Query, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  521 bits (1341), Expect = e-151
 Identities = 312/1013 (30%), Positives = 544/1013 (53%), Gaps = 11/1013 (1%)

Query: 2    DIARYTLAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSD 61
            +++ + L  R+ VW  + + ++ G  SYL LGR EDP F I+  VI   +PGA+A+EV+ 
Sbjct: 5    NLSDWALEHRSLVWYFMLVFVLAGVFSYLNLGREEDPNFTIKTMVISAQWPGASAEEVAR 64

Query: 62   EVTDVIEGAVQALQELKEVKSVSMQGRSEVTVEIKLEFAKSSAQLQQVWDKLRRKVADAQ 121
            +VTD IE  ++ L  L  ++S ++ GR+ + VE+  E    +  ++  W ++R  + D +
Sbjct: 65   QVTDRIEKKLEELDNLDHLRSQTVAGRTTIFVELVPE--TKARNVEPTWVRVRNMIGDIK 122

Query: 122  RQLPPGAGASIVNDDFSDVYALFYAVTGEGFSDKQLQDYVDTLRRELVLVPGVAKAATLA 181
             + P G      ND F DVY   YA T +G S +QL+D V+  R +++ V  + K   + 
Sbjct: 123  GEFPSGVVGPFFNDRFGDVYGNIYAFTSDGLSQRQLRDLVEDARAKVLTVDDIGKVDVIG 182

Query: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241
             Q EAI++E S+ ++A  G+  + +++ LQ Q+ VT +G V+A   R+ +      +S  
Sbjct: 183  AQDEAIYLEFSTRQIAALGIDQQSIIKTLQSQNAVTQSGFVNAGPERVALRVSGQFTSED 242

Query: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301
             L ++ + V  NN    L ++A I RGY +P S L R+NGQ AIG  I   TG N++  G
Sbjct: 243  SLRSINLRV--NNRFFPLTEVATIRRGYVDPPSSLFRFNGQPAIGLAIGMKTGANLLHFG 300

Query: 302  DAVKARLAELESQRPLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGVRS 361
            +A+ A++  + +  P+G+D+H +S Q   V  +V+ F   L  A+AIV V+  + +G+R+
Sbjct: 301  EALDAQMKRVVADLPVGVDVHRVSDQPAVVDEAVSGFTSALFEAIAIVLVISFISLGLRA 360

Query: 362  GVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQEP 421
            G+++   + L +A T   M    I++QRISLGALIIALG+LVD+A++  + ++ R   E 
Sbjct: 361  GMVVAVSIPLVLAITFVYMEYTGISLQRISLGALIIALGLLVDDAMIAVEMMVARL--EV 418

Query: 422  NADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLSWV 481
              D ++  + V  +T +P+L GT+V +  F  +GL+ S  GE+  +LF VI  S+ +SW+
Sbjct: 419  GDDLRKAATYVYTSTAFPMLTGTLVTVAGFIPVGLNNSAAGEFTFTLFVVIAVSLIVSWI 478

Query: 482  FAVTVTPMLCHDFLRVKAPTKEAKPSKLVTGYKAVLQWVLSHRVVSCAMLLGTLVAAVWG 541
             AV  TP+L    L     +   K  +  +G+  +L   L  R V+    +     ++ G
Sbjct: 479  VAVLFTPLLGVTILPKTMKSHHEKKGRFASGFSWLLGRALRWRWVTIVATVALFALSIGG 538

Query: 542  AQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDVTQKD-GITNITSFIGGG 600
               +   F P S R + +VD  LPQ S I  T + +A  E+++  K+  I + T+++G G
Sbjct: 539  MSLVQQQFFPSSDRVELIVDWNLPQNSSIAETNRQMAQFEQEMLAKNTDIDHWTTYVGEG 598

Query: 601  GLRFMLTYSPEARNPSYGQLLIDIDDYTKIAPLVGELQNELDAKYPDASIKVWKFMLGRG 660
              RF+L++  +  + ++GQ +I          +  ELQ+ LD  +      V    +G  
Sbjct: 599  APRFILSFDVQTPDVTFGQTVIVTKGLDVRDKVRAELQDYLDRTFIGTDAFVKLLDIGPP 658

Query: 661  GGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQDDWRQQVPVLQPVYSAQEAQRL 720
             GK ++    GPD   +R+L +Q   I+     L  +  DW +   V++      +A++L
Sbjct: 659  VGKPVQYRLSGPDIQKVRELGQQLSGIVGEHRLLSNLVMDWNEPTRVVKVDVLQDKARQL 718

Query: 721  GLTTQEISAAIAQTLNGRNVGVYREGNDLIPLMVRAPENERHHERAIENSEVFSAQAGRY 780
            G+++++I+ A+   + G  V   R+   L+ ++ RA   ER     ++N ++  A  G+ 
Sbjct: 719  GVSSEDIANAMNSIVEGSTVTQVRDDIYLVNVVARAQLAERGSIETLQNLQL-PATNGKA 777

Query: 781  IPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIE--LPA 838
            +P+S + +    + Q  + RR +R+PT+ V+A        A     ++ K+E  E  LP 
Sbjct: 778  VPLSAIANFRYELEQPTIWRR-DRIPTVTVKAAIIGPTQPATIVEQLKPKLEAFEKMLPV 836

Query: 839  GYELIWYGEYKASKDANEGLALSAPYGFAAMILAVVFMFNALRQPLVIWMTAPFAVVGVT 898
            GY+L   G  ++S D+   +    P    AM   ++    +  +  +++  AP A++GV 
Sbjct: 837  GYKLETGGSVESSADSQAPIVAVVPLMLFAMATILMVQLQSFSRLFLVFAVAPTALIGVV 896

Query: 899  IGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGKEAYFAIIDAAVSRARP 958
            + L+    P  F+AILG L+LIG++++N+++LV Q +     G  A+ A+I+A   R RP
Sbjct: 897  VALLFSNAPMGFVAILGVLALIGILIRNSVILVVQIEHLRSEGVSAWRAVIEATEHRMRP 956

Query: 959  VLLGAFTTILGVAPLLVDPFFKSMAVTIMFGLLFATILTLVVIPLFYAVLFRV 1011
            ++L A    L + P+  + F+  MA  +M G++  T LTL+ +P  Y   FR+
Sbjct: 957  IMLTAAAATLALIPISREIFWGPMAYAMMGGIVVGTALTLLFLPALYVAWFRI 1009