Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  119 bits (297), Expect = 2e-31
 Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 27/360 (7%)

Query: 13  RSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASD-LTFNGVVRAAQRAD 71
           + +L  V+ +   L+ CGEA +  A  P  +P  T +  ++ ASD ++  GVV A   A 
Sbjct: 18  KHMLLGVLGACFFLSACGEAQKPQAQEP--RPVRTVVATNRAASDAVSLTGVVEAQNEAT 75

Query: 72  LAFRISGRLTDIAVKEGDQVKKGQLLASLDSRD-------AKTALEAAQLELKNTEQEYR 124
             FRISGR+ D  V  GD+V  GQ+LA LD +D       A+ AL AA   L  T  +Y 
Sbjct: 76  YGFRISGRVIDRLVNVGDRVAPGQVLARLDPQDEQNALRSAQAALGAANANLTQTRNQYE 135

Query: 125 RAKAI----FEKTQAISKAELDKVTNR--YDLAKNRVEEAKRKLEYTQITAPFDGVISEK 178
           R + +    F       +AE   +  R   D A+ R++ A+ +L +T++ A   GV++++
Sbjct: 136 RQRQLLARGFTPRAQYEQAEQAFLNARAQVDDAEARLQMAEDRLGFTELKADSAGVVTQR 195

Query: 179 TIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGV-RNTRAIAELSAIPNQQFDLKL 237
             E    VQA Q ++ +   +  +   ++P   MLSG+  +      L+  P      ++
Sbjct: 196 RAEPGEVVQAGQPVIEVARQDGRDAVFDVP-AAMLSGLPGDPEVTVALATDPAVTATGRV 254

Query: 238 RTYSTQPSSDSQTYSVVLGFED-LKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVP 296
           R  + Q    ++T+ V +G  +  +G R+   +  +V+       D   ++ +P +AL  
Sbjct: 255 REVAPQADPVTRTFRVRVGLTNPPEGLRLGTTVVGRVM------VDRGPVVEIPASALTR 308

Query: 297 DNQGKQFVWVVNAQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
            N  K  VWVV+ + Q    R +++       V + + LKP E V+ AGV ++  G  VR
Sbjct: 309 LND-KPAVWVVDPKTQTVALRTIEVLRFGPASVSVGEGLKPSEIVVTAGVQALHPGQKVR 367