Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  107 bits (267), Expect = 5e-28
 Identities = 95/356 (26%), Positives = 169/356 (47%), Gaps = 26/356 (7%)

Query: 16  LSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDL-TFNGVVRAAQRADLAF 74
           L+ ++A++LLL  C +     AP   V+P L+  V ++   +L  F G ++A   ++L F
Sbjct: 4   LTGILAASLLLVACSKE---DAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGF 60

Query: 75  RISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQ 134
           R+ GR+    V  G +V+KG LLA LD  D +  L +AQ +L   + +Y  A+A   + Q
Sbjct: 61  RVPGRIARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQ 120

Query: 135 AI------SKAELD------KVTN-RYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIE 181
            +      ++A+LD      K T    D AK  V +A  +L Y ++     G+++    E
Sbjct: 121 ELFNRGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAE 180

Query: 182 NFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYS 241
               V A Q ++ L   +  E  I++P  +      +   +      P+      +R   
Sbjct: 181 AGQVVSAGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIE 240

Query: 242 TQPSSDSQTYSVVLGF-EDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQG 300
            Q  S ++T    L   E    FR+   +S   +  A  P      I +PL+AL  +  G
Sbjct: 241 PQAQSATRTRRARLTLTETPPAFRLGTAISV-TLSTAIAPR-----IEVPLSAL-QEVDG 293

Query: 301 KQFVWVVNAQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
           K  +W+++  +Q  + R + + +   D  ++   +KPGE+++IAGV+S++ G  V+
Sbjct: 294 KTRIWLLDTHSQTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVK 349