Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 97/389 (24%), Positives = 180/389 (46%), Gaps = 46/389 (11%)

Query: 8   SMAAKRSL------LSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLT-- 59
           S AA++ L      L+A++A A  + G       +   P    A    VA+  +S++   
Sbjct: 9   SSAARKGLWPAVTGLTALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAW 68

Query: 60  --FNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELK 117
             F+G + A +R D+  R++G +  +  +EG  VK+G LL ++D       +E A+ ++ 
Sbjct: 69  DEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVA 128

Query: 118 NTE-------QEYRRAKAIFEKTQAISKAELDKVTN-------RYDLAKNRVEEAKRKLE 163
           + +        E  RAK +++  +AI++ E D+  N           A+  ++ A+  L 
Sbjct: 129 SAQARQSFSRSEQERAKRLWDD-KAIAQREFDERVNAGREADANLRAAQASLQSARLNLG 187

Query: 164 YTQITAPFDGVIS--EKTIENF-AQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRN-- 218
           YTQ+ AP  G I   E T+ N  A      V+  L  ++ +  + +   +V+   +++  
Sbjct: 188 YTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLP 247

Query: 219 --TRAIAELSAIPNQQ---------FDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMP 267
             + A  ++ +IP Q          F  KL+    Q  + S T  V   F++  G  ++P
Sbjct: 248 TGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDAKSGTVRVRASFDNKDG-ALIP 306

Query: 268 GMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDR 327
           G  A+ I +    +D   L++      +  +Q K+FV VV   ++A  R V +G +    
Sbjct: 307 GQFAR-IRMGQARSDSALLVS---ERAIGTDQNKKFVMVVGEDSKATYREVTLGASINGL 362

Query: 328 VVITQHLKPGEQVIIAGVSSVREGMTVRP 356
            V+++ LK G++VI+ G+  +R G  V P
Sbjct: 363 RVVSKGLKAGDRVIVNGLQHIRPGALVAP 391