Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 83/323 (25%), Positives = 143/323 (44%), Gaps = 13/323 (4%)

Query: 40  PVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLAS 99
           P  K A+     +Q A  L+  G + A ++ ++   + GR+  I    G +V+ GQLL  
Sbjct: 40  PPAKVAVATAQKTQVARFLSGIGTLEANRQVEVPAEVEGRVAKILFTPGGEVRAGQLLVQ 99

Query: 100 LDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAK 159
           L+    +  +E    +  N +    R + +  + QA ++ +L++    +D A   +  A+
Sbjct: 100 LNDAPEQGDMERLTAQRANAKALLERTRRLLPQ-QAATQEQLEQAQAAFDQASGDLRRAQ 158

Query: 160 RKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNT 219
             LE  +I APFDGV+  + +     V+A   ++ L D   L   + +P   +    RN 
Sbjct: 159 AVLEQKRIKAPFDGVLGIRRVNLGQFVRAGDALVSLTDSRTLFANLTLPETALPVLKRNQ 218

Query: 220 RAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGM--SAKVIPVA 277
           +    + A P + F  +L T   Q  SD++T  +    ++  G  + PGM  + KV   A
Sbjct: 219 QVALSVDAYPGRVFQGRLSTIEPQIGSDTRTVRLQATIDNADG-ALTPGMFVNGKVALPA 277

Query: 278 DKPADENTLITLPLTALVPDNQGKQFVWVVNAQN----QAEKRYVDIGTTYKDRVVITQH 333
              A     IT+P TA+     G     V  A+      A++ +V  G      VVI   
Sbjct: 278 RPDA-----ITVPETAITYSTHGDSVFVVRPAEKGDGFTAQQVFVKAGERQDGLVVIENG 332

Query: 334 LKPGEQVIIAGVSSVREGMTVRP 356
           L PG++V+ +G   +  G  V P
Sbjct: 333 LAPGDKVVTSGQLRLYTGAAVMP 355