Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., efflux RND transporter periplasmic adaptor subunit from Variovorax sp. OAS795

 Score =  100 bits (248), Expect = 9e-26
 Identities = 103/392 (26%), Positives = 185/392 (47%), Gaps = 48/392 (12%)

Query: 8   SMAAKRSL------LSAVIASALLLAGCGEAPQISAPAPVVKPALTEI-VASQRASDLT- 59
           S AA++ L      L+AV+A A  + G   + +  A AP      T + VA+  +S++  
Sbjct: 9   SSAARKGLWPAVTGLTAVLAVAAAVLGM-HSFKAEATAPAAAQQGTPVSVAAVASSEINA 67

Query: 60  ---FNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLEL 116
              F+G + A QR D+  R++G +  +  +EG  VK+G LL ++D       +E A+ ++
Sbjct: 68  WDEFSGRLEAVQRVDVRSRVAGAVQAVHFREGALVKQGDLLITIDPAPYAAEVERAEAQV 127

Query: 117 KNTE-------QEYRRAKAIFEKTQAISKAELDKVTN-------RYDLAKNRVEEAKRKL 162
            + +        E  RAK ++++ QAI++ E D+  N           ++  ++ A+  L
Sbjct: 128 ASAQARQAFSRSEQERAKRLWDQ-QAIAQREYDERVNASREADANLRASQASLQSARLNL 186

Query: 163 EYTQITAPFDGVIS--EKTIENF-AQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRN- 218
            YTQ+ AP  G I   E T+ N  A      V+  L  ++ +  + +   +V+   +++ 
Sbjct: 187 GYTQVRAPVSGRIGKLEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDL 246

Query: 219 ---TRAIAELSAIPNQQ---------FDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVM 266
                A  ++ +IP Q          F  KL+    Q  + S T  V   F++  G  ++
Sbjct: 247 PSGASARGQIESIPVQMGTSGFDGTPFIGKLQLIDNQVDARSGTVRVRASFDNKDG-ALI 305

Query: 267 PGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKD 326
           PG  A++       A  +T + +   A+  D Q K+FV VV   N+A  R V +G +   
Sbjct: 306 PGQFARI---RMGQARNDTALLVSERAIGTD-QNKKFVMVVGEDNKAMYREVTLGASING 361

Query: 327 RVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
             V+++ LK G++V++ G+  +R G  V P T
Sbjct: 362 LRVVSKGLKAGDRVVVNGLQHIRPGALVVPQT 393