Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (318), Expect = 6e-34
 Identities = 96/351 (27%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 12  KRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASD-LTFNGVVRAAQRA 70
           K ++LS  + + L+ +    A + + P  +    +TE V SQ+ S  L+  G ++A Q  
Sbjct: 3   KNTVLSLTLLTLLMNSAVLSAKEPNQPPAI--SVVTESVQSQQISQSLSVVGKLKAEQSV 60

Query: 71  DLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIF 130
           D+A  ++G++  IAV+   QVKKGQ+L  LD   A+ AL  A+  L++ +++    + + 
Sbjct: 61  DIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLL 120

Query: 131 EKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQ 190
            K  AI+  E+D    R ++ + R+  A+  L    ITAPFDG +          V A  
Sbjct: 121 -KRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGS 179

Query: 191 VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQT 250
            ++ L +L+ + + ++IP R +    +  +      A PN QF+  +    ++ + ++  
Sbjct: 180 ELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLN 239

Query: 251 YSVVLGFEDLKGFRVMPG--MSAKV-IPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307
             V + F +    R+ PG  MSA++  P    P        +P+ AL      K+FV+V+
Sbjct: 240 LRVRVHFPN-PDQRLKPGMLMSARIHFPAISAP-------IIPVQALEYSGT-KRFVYVI 290

Query: 308 NAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
              N A++R V +G   +++VVI + L+ GE++++ G+ ++R+   V   T
Sbjct: 291 GEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVT 341