Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  110 bits (274), Expect = 8e-29
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 22/359 (6%)

Query: 9   MAAKRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68
           MA  R L    +    +L GC +      P  + +  + ++  +  A+ +T  G V+A  
Sbjct: 1   MALMRPLSVVCLGLLYMLTGCSKE---EVPETLPRVGVQQVQPTDFAARVTLTGDVQARV 57

Query: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128
           + DL+FR+ G++   +V  GD VK  Q+LA LD +D +  +++A+ E+   +    +  A
Sbjct: 58  QTDLSFRVGGKIISRSVDVGDHVKANQVLARLDPKDLQNNVDSAKAEVFAAQARVTQTSA 117

Query: 129 IFEKTQAI------SKAELDKV-----TNRYDL--AKNRVEEAKRKLEYTQITAPFDGVI 175
            F + Q +      S++E D       +N+  L  A+ ++  A  +L YT + +   GVI
Sbjct: 118 AFVRQQKLLPKGYTSQSEYDAAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVI 177

Query: 176 SEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDL 235
           +E+  E    VQA   I  L    D +    +   ++++   +   +  L   P  Q   
Sbjct: 178 TERQAEVGQVVQATMPIFSLAVDGDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAHG 237

Query: 236 KLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALV 295
            +R  +   S+ S T  V +G +D     V PGM       A   A     I LP +AL 
Sbjct: 238 FVREITPTVSAQSGTVQVKVGLKD-----VPPGMQLGAPVTATTNAQGRPSIELPWSALT 292

Query: 296 PDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
                +  VWVV   ++ E R V+I      ++V+   LK GE V++ G   +  GM V
Sbjct: 293 KALH-EPAVWVVGEGDKVELRKVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQV 350