Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  105 bits (262), Expect = 2e-27
 Identities = 102/366 (27%), Positives = 174/366 (47%), Gaps = 42/366 (11%)

Query: 12  KRSLLSAVIASALLLAGCG---EAPQISAPAPVVKPALTEIVASQRASDL-TFNGVVRAA 67
           KR LL  ++++A+LL GC    EAP+      V++P L+  V  Q  S L  F G ++A 
Sbjct: 2   KRLLL--MLSAAVLLVGCTSEEEAPE------VIRPVLSVKVEPQVQSQLGRFAGSIQAR 53

Query: 68  QRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAK 127
             + L FR+SGR+    +  G QVK G  LA+LD  D +  L AA+ +L   + ++  A+
Sbjct: 54  FESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQ 113

Query: 128 AIFEKTQAI------SKAELD------KVTN-RYDLAKNRVEEAKRKLEYTQITAPFDGV 174
           A   + Q +      ++A+LD      K T+   + A++ V +A+ +L+Y+ + A    V
Sbjct: 114 ADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAV 173

Query: 175 ISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFD 234
           I+    E    V A Q ++ L   +  E  I++P  +     +           P     
Sbjct: 174 ITAWQAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTT 233

Query: 235 LKLRTYSTQPSSDSQTYSVVLGFEDLK-----GFRVMPGMSAKVIPVADKPADENTLITL 289
             LR    Q  + ++T    L           G  +   +S++V P ++          L
Sbjct: 234 ASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSE----------L 283

Query: 290 PLTALVPDNQGKQFVWVVNAQNQ-AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSV 348
           PL+AL+ +  GK  VWV++ QN+    R V +     D +V++  ++PGE+V+ AGV+S+
Sbjct: 284 PLSALL-ERDGKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSL 342

Query: 349 REGMTV 354
           + G  V
Sbjct: 343 KPGQKV 348