Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  102 bits (254), Expect = 2e-26
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 26/321 (8%)

Query: 62  GVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAA-------QL 114
           G V A    ++  R++G L  I  KEG +VK G LLA +D R  + AL+ A       Q 
Sbjct: 85  GTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQA 144

Query: 115 ELKNTEQEYRRAKAIFEKTQAISKAELD----KVTNRYDLAKN---RVEEAKRKLEYTQI 167
           +LKN + +  R K ++ +  +I+K  LD    +V     L K    +V +A+  L++TQI
Sbjct: 145 QLKNAQVDLARYKGLYAE-DSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNLDFTQI 203

Query: 168 TAPFDGVISEKTIENFAQVQANQ--VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAEL 225
            AP  G +  + ++    V AN    ++++     + VA  +P   + + +   R+ A L
Sbjct: 204 RAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERYRSGASL 263

Query: 226 SAIPNQQFDLKLRTYSTQPSSDSQ--TYSVVLGFE---DLKGFRVMPGMSAKVIPVADKP 280
                 + D KL++     S D+Q  T +  L F+   + K   + P     V  +AD  
Sbjct: 264 PVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLAD-- 321

Query: 281 ADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQV 340
                ++  P  A+   N G  F +VVN Q+    R + +G +  +  VI   LK G+++
Sbjct: 322 -TLKQVVMAPAAAIQFGNDG-TFAYVVNEQSTVNVRKLKVGASDGENSVILDGLKAGDRL 379

Query: 341 IIAGVSSVREGMTVRPYTDNN 361
           ++ G   +REG  V    D++
Sbjct: 380 VLEGTDRLREGTKVEVVEDSS 400