Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  140 bits (353), Expect = 5e-38
 Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 24/355 (6%)

Query: 21  ASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRL 80
           A+ALLLA CG   Q +AP    +PAL        A+  ++ G VRA    +LAFRI G++
Sbjct: 13  AAALLLAACG---QEAAPPAAPRPALVVQPQPAEAAADSYPGEVRARFEPELAFRIGGKV 69

Query: 81  TDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTE-------QEYRRAKAIFEKT 133
           +   V+EG +VK  Q LA LD +D +  LEA + +L   E        E  R + + E+ 
Sbjct: 70  SKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLER- 128

Query: 134 QAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVISEKTIENFAQV 186
           Q +S ++ D   N Y     R+++AK        + EY  + AP  GVI+++ +E    V
Sbjct: 129 QMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVV 188

Query: 187 QANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSS 246
            A Q +  L    + EVAI +P +             EL + P  +F  ++R  S     
Sbjct: 189 AAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAADP 248

Query: 247 DSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWV 306
            S+T++  + F          G SA+V    D        + +PL+A+  +N G+ +VW 
Sbjct: 249 RSRTFAARIAF-TTAAVPAELGQSARVFIAKDGLIP----LAVPLSAVTAEN-GQAYVWR 302

Query: 307 VNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNN 361
           VN +++ E+  V +G    D V + + L PG+ V+ AG   +REG  VRP   +N
Sbjct: 303 VNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRPVDRSN 357