Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  100 bits (249), Expect = 6e-26
 Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 18/351 (5%)

Query: 13  RSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADL 72
           R   +A +A     AG G A      AP V+  +T +   +   D    G +R+ Q   L
Sbjct: 28  RDKAAAPVAGTGTGAGPGAA---GGGAPGVE--VTRVKTIRLQDDAQAVGTLRSRQSVTL 82

Query: 73  AFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEK 132
               SGR+  I   +G +VK GQLL  LD    +  L  AQ +L       +R + +  +
Sbjct: 83  KPETSGRVARIVFADGARVKAGQLLVQLDDTLQRAELSQAQAQLSIARANLKRNQELVAQ 142

Query: 133 TQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVI 192
              +++  +++      +A+ +V  A  +L+  +ITAPF G +  ++I   A V+    +
Sbjct: 143 -NFVAQRVVEESQANLQVAEAQVALADARLQRMRITAPFAGTVGLRSINLGAYVKDGDSL 201

Query: 193 MILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYS 252
           + L+D + L V   +P R             +L A+PN+ F+ K+        ++ ++ S
Sbjct: 202 VNLEDTSMLTVDFRLPERYQSQLAPGQVVQVQLDALPNRPFEAKVLAVDPLLDANGRSIS 261

Query: 253 VVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQ 312
           V           + PGM A+V+ V     +E  L+ +P  ALVP   GKQ+ +V++ Q +
Sbjct: 262 VRAVMPPAADNVLRPGMFARVLIVFS--VNERALV-VPEEALVP-QAGKQYAYVLDEQGE 317

Query: 313 --AEKRY-----VDIGTTYKDRVVITQHLKPGEQVIIAGVSSV-REGMTVR 355
             A+KR      V +G      V +   L+ G+ V+IAG   + R+G  VR
Sbjct: 318 GDAKKRLSRRVEVALGARRGSEVEVVSGLQQGDAVVIAGQQRLQRDGTAVR 368