Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., RND efflux system, membrane fusion protein CmeA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  108 bits (271), Expect = 2e-28
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 33/349 (9%)

Query: 33  PQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVK 92
           P  SAP P   P + + ++   A    F G + A +  +L  R+ G L  I+V EG  V 
Sbjct: 37  PPASAPPPPSVP-VAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAISVPEGRLVS 95

Query: 93  KGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQ------AISKAELDKVT- 145
           +GQLL  +D R  + AL+ A  +L+  E   R+A+A F++ Q      A+S+   D VT 
Sbjct: 96  RGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTA 155

Query: 146 ------NRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQAN-----QVIMI 194
                  +   AK  V  A+ +L +T+ITAP  G +    +     V         ++  
Sbjct: 156 TRNARQAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTT 215

Query: 195 LQDLNDLEVAIEIPHRVMLSGVRNTRAIAE-------LSAIPNQQFDLKLRTYSTQPSSD 247
           +   N + V  +I     L  +R+TR+          L+      +   L     Q +  
Sbjct: 216 IVSHNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRS 275

Query: 248 SQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307
           + T        D  G  + PG+ A++     +P +   +  L ++A    +QGK +V +V
Sbjct: 276 TGTIRARAVIPDPDGM-LSPGLFARISLPIGEPRETVLIDDLAVSA----DQGKNYVLIV 330

Query: 308 NAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRP 356
             +NQ E R V++G       V+TQ + PGE++I+ G+  VR GMTV P
Sbjct: 331 GKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGL--VRPGMTVAP 377