Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 26/318 (8%)

Query: 58  LTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLEL- 116
           LT  G + AA    +  R+ G+L  +  +EG QVK G LLA +D    K AL  AQ +L 
Sbjct: 76  LTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLA 135

Query: 117 --KNTEQEYRRAKAIFE---KTQAISKAELD-------KVTNRYDLAKNRVEEAKRKLEY 164
             K T    RR  A ++   KT  +S+ ELD       +        +  V  A+ +L++
Sbjct: 136 KDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDW 195

Query: 165 TQITAPFDGVISEKTIENFAQVQANQV--IMILQDLNDLEVAIEIPHRVMLSGVRNTRAI 222
           ++ITAP DG +  K ++   Q+ +     I+++   + +++   +P   + + V+  +A 
Sbjct: 196 SRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAG 255

Query: 223 AELSAIPNQQFDLKLRTYSTQPSSDSQ------TYSVVLGFEDLKGFRVMPGMSAKVIPV 276
             L      + + K  +  T  S D+Q      T  V   F + +   + P        +
Sbjct: 256 KPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNN-QDDALFPNQFVNARML 314

Query: 277 ADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKP 336
            D    E   + +P  AL   N+G  FVWV+N++N+  K  V  G     +VVI   +  
Sbjct: 315 VD---TEQNAVVIPTAALQMGNEG-HFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISA 370

Query: 337 GEQVIIAGVSSVREGMTV 354
           G++V+  G+  + EG  V
Sbjct: 371 GDRVVTDGIDRLTEGAKV 388