Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 94.4 bits (233), Expect = 5e-24
 Identities = 94/362 (25%), Positives = 161/362 (44%), Gaps = 21/362 (5%)

Query: 7   RSMAAKRSLLSAVIASALL-LAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVR 65
           R+++    L  A++A A+  L GCG+  + + P P        + A+Q    L   G + 
Sbjct: 21  RTLSWLHFLPLALLALAIFPLTGCGDKHE-NKPDPARAVRYVVVGAAQTLPALERTGEIH 79

Query: 66  AAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRR 125
           A     L+FR  GR+   +V  GD+V  GQLLA+LD+   +  L+ A  + +  +   + 
Sbjct: 80  AHDETTLSFRTGGRILTRSVDIGDRVTAGQLLATLDNTTGQNQLDGAAADYEGAKASAQV 139

Query: 126 AKAIFEKTQ------AISKAELDKVTNRYDLAKNRVE-------EAKRKLEYTQITAPFD 172
           A     + Q      AI++ +LD     + +A+ R++        A+  L +T++ AP  
Sbjct: 140 AALNVSRMQKLMPTGAIARTQLDSARADWLVARARLKSSEAAWRNARESLGWTRLIAPQA 199

Query: 173 GVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQ 232
           GVI+         V   Q ++ L      +VA +I     +  +        L + P+ Q
Sbjct: 200 GVITAVNASAGQVVSDGQSVLTLATGEARDVAFDIATPDAIPPLDKAFLRVSLLSDPSVQ 259

Query: 233 FDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLT 292
               LR  + Q    ++T+ V    ++      + G S  V   +  P       TLP +
Sbjct: 260 ASAALRDITPQADPQTRTWRVRATLQNPPAAMAL-GASVTVTLPSSAPRG----YTLPAS 314

Query: 293 ALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGM 352
           AL      K  V+V+  Q++A+ R V   +     V+I   L+PG++VI AGVS++R G 
Sbjct: 315 ALTRVGD-KPAVFVITPQSRAQLRAVVPASYTASSVMIASGLEPGDRVITAGVSTLRSGE 373

Query: 353 TV 354
            V
Sbjct: 374 PV 375