Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  126 bits (317), Expect = 7e-34
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 12/328 (3%)

Query: 46  LTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDA 105
           + E+     A    F   + +    DL+F+ +G++  + V++G  +K+GQ LA L++R+A
Sbjct: 1   MAEVTVPGHAQQRVFPARIESGDATDLSFKRAGQIEALDVRQGAAIKQGQQLARLNAREA 60

Query: 106 KTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYT 165
           +  +   Q      ++++ R + +  + QAISKAE+D      D A   ++ A+ +L   
Sbjct: 61  QQRVNDRQTAATLAQRQFDRFQTLAGR-QAISKAEMDVQRANRDSANAALQIAREELNQM 119

Query: 166 QITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLS-GVRNT--RAI 222
            + APF G  +   + N   V   Q I  L   + L+V   IP  +  +  +RN   R +
Sbjct: 120 TLVAPFSGTAASVHVRNHQVVSPGQPIATLTRTDLLDVVFSIPENLFKTFDIRNAQYRPV 179

Query: 223 AELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKV-IPVADKPA 281
             ++A+P+++F    + +S    S++ T+ V+L       F  + G+S  V I + + PA
Sbjct: 180 VRINAMPDREFTAVYKEHSGSSDSNTLTWQVILTMPRPDDFPAVGGVSGTVTINLTNLPA 239

Query: 282 DENT-LITLPLTALVPDN---QGKQFVWVVNAQNQA---EKRYVDIGTTYKDRVVITQHL 334
             +   + +P+ A+   N   + +  VWVV  +  A   E R V +G    + VVIT  L
Sbjct: 240 GADAQALVVPVEAVFNPNNSPRNEPHVWVVTGEGDALHLEDRKVSVGQVSTEGVVITSGL 299

Query: 335 KPGEQVIIAGVSSVREGMTVRPYTDNNG 362
           K GE+V+ AGV  +     VR +T   G
Sbjct: 300 KAGERVVAAGVGELHANQPVRIWTRERG 327