Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 30/320 (9%)

Query: 58  LTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLEL- 116
           LT  G + AA    +  R+ G+L  I  +EG QVK G LLA +D    K AL  AQ +L 
Sbjct: 76  LTGLGTITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLA 135

Query: 117 --KNTEQEYRRAKAIFE---KTQAISKAELD-------KVTNRYDLAKNRVEEAKRKLEY 164
             K T    RR    ++   KT  +S+ ELD       +        +  V  A+ +L++
Sbjct: 136 KDKATLANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEAAVASAQLQLDW 195

Query: 165 TQITAPFDGVISEKTIENFAQVQANQV--IMILQDLNDLEVAIEIPHRVMLSGVRNTRA- 221
           ++ITAP DG +  K ++   Q+ +     I+++   + +++   +P   + + V+  +A 
Sbjct: 196 SRITAPIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAG 255

Query: 222 ---IAELSAIPNQQ--FDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPG--MSAKVI 274
              + E     N+Q   +  L +   Q  + + T  +   F + +   + P   ++A+++
Sbjct: 256 KGLVVEAWDRSNKQKLSEGSLLSLDNQIDTTTGTIKLKARFNN-QDDALFPNQFVNARML 314

Query: 275 PVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHL 334
                 A E   + +P  AL   N+G  FVWV+N  N+  K  V  G      VVI   L
Sbjct: 315 -----VATEENAVVIPTAALQMGNEG-NFVWVLNDDNKVSKHLVKTGIQDSQTVVIAAGL 368

Query: 335 KPGEQVIIAGVSSVREGMTV 354
             GE+V+  G+  + EG  V
Sbjct: 369 SAGERVVTDGIDRLTEGAKV 388