Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., multidrug efflux RND transporter subunit MdtA from Escherichia coli ECRC62

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 26/318 (8%)

Query: 58  LTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLEL- 116
           LT  G + AA    +  R+ G+L  +  +EG QVK G LLA +D    K AL  AQ +L 
Sbjct: 76  LTGLGTITAANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLA 135

Query: 117 --KNTEQEYRRAKAIFE---KTQAISKAELD-------KVTNRYDLAKNRVEEAKRKLEY 164
             K T    RR  A ++   KT  +S+ ELD       +        +  V  A+ +L++
Sbjct: 136 KDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEGTIKADEASVASAQLQLDW 195

Query: 165 TQITAPFDGVISEKTIENFAQVQANQV--IMILQDLNDLEVAIEIPHRVMLSGVRNTRAI 222
           ++ITAP DG +  K ++   Q+ +     I+++   + +++   +P   + + V+  +A 
Sbjct: 196 SRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAG 255

Query: 223 AELSAIPNQQFDLKLRTYSTQPSSDSQ------TYSVVLGFEDLKGFRVMPGMSAKVIPV 276
             L      + + K  +  T  S D+Q      T  V   F + +   + P        +
Sbjct: 256 KPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFNN-QDDALFPNQFVNARML 314

Query: 277 ADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKP 336
            D    E   + +P  AL   N+G  FVWV+N++N+  K  V  G     +VVI   +  
Sbjct: 315 VD---TEQNAVVIPTAALQMGNEG-HFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISA 370

Query: 337 GEQVIIAGVSSVREGMTV 354
           G++V+  G+  + EG  V
Sbjct: 371 GDRVVTDGIDRLTEGAKV 388