Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  106 bits (264), Expect = 1e-27
 Identities = 83/328 (25%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 31  EAPQISAPAPVVKPA-LTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIAVKEGD 89
           ++PQ +  A    P  + E+   +  ++L   G V + +   L   I+G +  I  +EG 
Sbjct: 37  KSPQSTPEAMTALPVDVVEVTPERLENNLNVTGNVLSNESVSLRAEITGLVESINFEEGQ 96

Query: 90  QVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDKVTNRYD 149
            VKKG  L  L+  +    L+  +   K  E +  R K +  + +AIS+ E D + N+Y+
Sbjct: 97  FVKKGTPLVYLNDDELTAQLDRLEYTKKLYEGQESRQKQLLAR-EAISQEEYDIILNQYN 155

Query: 150 LAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPH 209
              + ++  K +L+ T I APFDGV+  + I   + +    +I  + +++ +++   IP 
Sbjct: 156 TTLSDIKLVKAQLDKTVIKAPFDGVLGLRQISAGSVISTTDIIANIVNIDPIKIEFSIPE 215

Query: 210 RVMLSGVRNTRAIAELSAIPNQQFDLKL-RTYSTQPSSDSQTYSVVL-GFEDLKGFRVMP 267
           R         +  + +    N    LK  + Y+ +P  D+ T ++ L      +  + +P
Sbjct: 216 RY----ASQVQVGSTIEFSNNASHGLKKGKVYAYEPVIDANTRTLTLRAISPNEDRKFLP 271

Query: 268 GMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDR 327
           GM   +    +   +E+ L+ +P  +L+P+  G + +++VN +   ++R V IG      
Sbjct: 272 GMFVNI--RFNLEVEEDALL-VPSQSLIPELNGYK-LFLVNQEGIVQERQVQIGIRTDSE 327

Query: 328 VVITQHLKPGEQVIIAGVSSVREGMTVR 355
           V I   L PGE V+  GV   +EGM V+
Sbjct: 328 VQILDGLSPGEMVLTTGVLQAKEGMKVK 355