Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., efflux transporter, RND family, MFP subunit from Bacteroides ovatus ATCC 8483

 Score =  122 bits (305), Expect = 2e-32
 Identities = 97/339 (28%), Positives = 171/339 (50%), Gaps = 13/339 (3%)

Query: 23  ALLLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTD 82
           A+LL  CG+  Q +   P VK  +  ++++ R   L F G V+AAQ   L+FR+SG +  
Sbjct: 13  AVLLTSCGQRVQNTDSKPAVK--IDTVLSADRQIALQFPGRVKAAQDISLSFRVSGTIQY 70

Query: 83  IAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELD 142
           + V +G  V+KGQLLA LD  D +  L+AA+ E ++ + E  R  A++++      A  D
Sbjct: 71  MHVNDGAYVRKGQLLAELDPTDYQIQLDAAEAEYQSVKAEAERVMALYKENVTTPDAN-D 129

Query: 143 KVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLE 202
           K          +   AK +L YT++ APF G + ++  ++   V A   ++ +      E
Sbjct: 130 KAVYGLRQITAKYNHAKDQLAYTRLYAPFSGYVQKRLFDSHETVAAGMPVVSIISEGSPE 189

Query: 203 VAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGF-EDLK 261
           V I +P    +   + TR        P+Q++ L+L +  T  ++ +Q Y++ L   ++ K
Sbjct: 190 VEINLPAVEYIRRQQFTRYYCTFDIYPHQRYALELISV-TPKANANQLYTMRLQLKKEDK 248

Query: 262 GFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIG 321
                PGM+  V     +    N  +++P  A++ +N G+  +++ +A + A +R  D+ 
Sbjct: 249 QVVPSPGMNTMVTIECSEGDVRN--LSVPGGAILREN-GRTSIFLYDASSHAIRR-CDVT 304

Query: 322 TT---YKDRVVITQ-HLKPGEQVIIAGVSSVREGMTVRP 356
            T      R +IT   + PG+ V+ +GV  V+EG  V P
Sbjct: 305 VTRLLSDGRCLITSGEVNPGDLVVASGVHHVKEGEQVEP 343