Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Toluene efflux pump periplasmic linker protein TtgD precursor from Alteromonas macleodii MIT1002

 Score =  134 bits (337), Expect = 4e-36
 Identities = 105/380 (27%), Positives = 179/380 (47%), Gaps = 32/380 (8%)

Query: 7   RSMAAKRSLLSAVIASALL-LAGCGEAPQISAPAPVVKPALTEIVASQRASDLT--FNGV 63
           +S+    +L + ++ +AL  L+ C EAP    P   V      +   Q + +    F G 
Sbjct: 5   KSLFHSLALRTVMVFTALAGLSACEEAP---TPPKAVSSTPVTLYKVQHSDETIAKFPGQ 61

Query: 64  VRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEY 123
           V AA+ ++L+FRI G+L ++ VK G++VK+ QL+A LD RDAK  L  AQ +   +   +
Sbjct: 62  VEAAEYSNLSFRIGGKLQELKVKAGEEVKENQLIARLDDRDAKAQLATAQSQFDVSSAMF 121

Query: 124 RRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENF 183
            R +A  EK  A+S++  D+    +  AK  +  A+ +L YT++ APF G+I+   +EN+
Sbjct: 122 ERMEASVEK-GAVSRSTFDEAKANFLAAKASLTNAQDQLSYTELRAPFAGLIASVPVENY 180

Query: 184 AQVQANQVIMILQDLNDLEVAIEIPHRVM----LSGVRNTR----AIAELSAIPNQQFDL 235
             +   Q I  L     ++V  ++P + M     S  R  R    A    S +P++++  
Sbjct: 181 QVIVPQQTIAELHMPGAIDVTFQLPEQKMRMIDRSRARENRTSEMAWVSFSGMPDKRYAA 240

Query: 236 KLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITL-PLTAL 294
             + + +       +Y V +   +     V+ GMSA V+    K  + N  + L P  A+
Sbjct: 241 MYKDHESTTRQGELSYEVTITLPEPDDINVLAGMSATVLLDMSKLIESNAKLWLVPFGAV 300

Query: 295 VPDN--QGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPG----------EQVII 342
           V DN    K  VW   + +    +    GT     V+IT+ +  G          ++++ 
Sbjct: 301 VTDNADPDKAIVWRFKSSDSDATK----GTVEAVEVMITRGISNGLLVEGPLNDDDKIVA 356

Query: 343 AGVSSVREGMTVRPYTDNNG 362
           AG   V+EG  V  +T   G
Sbjct: 357 AGAHLVKEGQAVTEWTKEGG 376