Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  117 bits (293), Expect = 5e-31
 Identities = 102/364 (28%), Positives = 170/364 (46%), Gaps = 21/364 (5%)

Query: 7   RSMAAKRSLLSAVIASAL-LLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVR 65
           R + A   L  AV+A AL LLA C E  +  AP  V    + EI A      L ++G V+
Sbjct: 5   RFVTATTVLKIAVVAGALSLLASCSEEKKAEAPDVVRPVKVAEIGAPDEGRKLIYSGAVK 64

Query: 66  AAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKN------- 118
           A    +L F +SG++T+  V  GD V  G +LA LD  D K A+  A+ +L +       
Sbjct: 65  ARTEMNLGFHVSGKITERLVNVGDHVSPGAVLARLDPVDYKLAVTRAEADLSSARKQVEI 124

Query: 119 TEQEYRRAKAIFEKT----QAISKAEL--DKVTNRYDLAKNRVEEAKRKLEYTQITAPFD 172
           T+  YRRA+ +  +      A+ +A L  D+  +    A++ +E+A+ ++ Y+ + +   
Sbjct: 125 TDLAYRRAQTLAAQNATSQSALEQASLSRDQAVSSRQSAESALEQARNQVAYSDLKSDQK 184

Query: 173 GVISEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQ 232
           G+++  + +    V A   ++ +    + EV I +P   +       +  A   A     
Sbjct: 185 GIVTTVSADVGQVVSAGTPVVTVAVDGEKEVQIAVPEMDVSHFQPGKQVSASFWAANTIV 244

Query: 233 FDLKLRTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLT 292
              K+R  +      S+T+SV +   + +  RV+ GM+A +   AD         ++PL 
Sbjct: 245 LTGKVREVAQSADPQSRTFSVRVSLPEDQ--RVLLGMTATIEAKADNAV---PAFSVPLA 299

Query: 293 ALVPDNQGKQFVWVVNAQ-NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREG 351
           AL  +  GK+ VWVV+ Q      R V++     D   I++ L  G  V+ AG   +RE 
Sbjct: 300 AL-GEKDGKKVVWVVDRQKGTVSSRPVEVVDFSDDGARISKGLSTGVLVVSAGTQFMRED 358

Query: 352 MTVR 355
           M VR
Sbjct: 359 MKVR 362