Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  106 bits (265), Expect = 8e-28
 Identities = 97/358 (27%), Positives = 157/358 (43%), Gaps = 24/358 (6%)

Query: 12  KRSLLSAVIASALLLAGCG-EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRA 70
           K  L++A +     LA C  E P    P   V     E     R S +T  G VRA  + 
Sbjct: 2   KTILIAAALGGIFALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVIT--GEVRARVQT 59

Query: 71  DLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIF 130
           DL+FR+SG++ +  V  G +VK GQLLA +D  + K  ++ A   L++ E +  +A+  F
Sbjct: 60  DLSFRVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTF 119

Query: 131 E------KTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISE 177
           +      KTQ  S++ +DK        +  V  A+ +L+       YT++ A  DGVI+ 
Sbjct: 120 DRQQNLFKTQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITA 179

Query: 178 KTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKL 237
           + +E     QA Q++  L      +   ++   + L    +      L + P Q     +
Sbjct: 180 RNVEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPV 239

Query: 238 RTYSTQPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPD 297
           R  S     D+ T  V +G   L G   MP + A V         +   I LP +A+   
Sbjct: 240 REISPTIDPDNGTIRVKVG---LNGDMTMP-LGAPV--SGHFRFRQIDAIELPWSAMA-S 292

Query: 298 NQGKQFVWVVNAQ-NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
             G   VW+V+ + ++   R V +      + V+T+ L PG+ V+  G   +R G  V
Sbjct: 293 QDGAPAVWLVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKV 350