Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  101 bits (252), Expect = 3e-26
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 26/341 (7%)

Query: 44  PALTEIVASQRAS---DLTFNGVVRAAQRADLAFRISGRLTDIAVKEGDQVKKGQLLASL 100
           P     +A  +A+   D T  G   AA   ++A   +G +T+I+ K+G  +K G L+  L
Sbjct: 74  PPTVSTIAVAKATLPMDATATGWAVAADITNIAPLQAGLVTEISAKDGQHIKAGDLILKL 133

Query: 101 DSRDAKTALE-------AAQLELKNTEQEYRRA----KAIFEKTQAI--SKAELDKVTNR 147
           D R A+ A++       A Q  L+ TE  ++RA    K   E  Q +  ++A  D  + +
Sbjct: 134 DDRIARAAVDKDKANIAADQATLEQTEAAFQRATNLVKQSAESQQVLDQARAARDGASAK 193

Query: 148 YDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQVIMILQDLNDLEVAIEI 207
            D  K  +   +  LE+ +I APFDG + + T+   A + A   I+ +   + + V+  +
Sbjct: 194 IDADKATLASDQVTLEHMEIRAPFDGRLGDITVSPGAYLSAGVNIVTITKYDPISVSFRL 253

Query: 208 PHRV---MLSGVRNTRAI-AELSAIPNQQFDLKLRTYSTQPSSDSQTYSVVLGFEDLKGF 263
             R    +  GV    A+  + +A   +     LR Y       S T      F++ +G 
Sbjct: 254 SQRYLPQLREGVTKETAVDVDPAATGGEPMRGVLRFYDNAVDQTSGTVLAKAEFKNDRGL 313

Query: 264 RVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRYVDIGTT 323
            + PG S   + V      ++ +I +P  A+ P  +G  FV+ V++++ A    V++  +
Sbjct: 314 -LWPGQS---VNVTAHFVSDDEMIVVPTVAVRPGPKG-NFVYTVDSEHHAHMTSVEVARS 368

Query: 324 YKDRVVITQHLKPGEQVIIAGVSSVREGMT-VRPYTDNNGA 363
             D   IT  L  GE +I+ G S + +G T V  ++D  GA
Sbjct: 369 NGDLTAITSGLNGGEHIIVEGQSELADGQTVVEQFSDKGGA 409