Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Multidrug resistance protein MdtA from Acinetobacter radioresistens SK82

 Score =  119 bits (298), Expect = 1e-31
 Identities = 106/367 (28%), Positives = 175/367 (47%), Gaps = 31/367 (8%)

Query: 12  KRSLLSAVIASALLLAGCG-EAPQISA-PAPVVKPALTEIVASQRASDLTFNGVVRAAQR 69
           K +L+S +    L L GC  EAPQ    P  +V   LT           ++ G V+A Q+
Sbjct: 5   KSALVSLIFMCYLTLGGCSREAPQTEEIPYVMVAQPLTT-----HHEQKSYAGEVQARQQ 59

Query: 70  ADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRD-------AKTALEAAQLELKNTEQE 122
             LAFR+ G++T    + GD+V+ GQ+LA LD  D       A+  LE+AQ  LK    E
Sbjct: 60  TALAFRVGGQVTARLAEVGDRVRAGQVLARLDVSDAQLQSNAARAQLESAQAALKIAADE 119

Query: 123 YRRAKAIFEKTQAISKAELDKVTNRYDLAKNRVEEAK-------RKLEYTQITAPFDGVI 175
            +R + +     A+S+++ D V N+Y  A++   +A+        +  Y Q+ A   GVI
Sbjct: 120 LQRFRQLL-PMNAVSRSQYDAVENQYKSAESAYRQAQSNYQVSTNQTRYNQLQANRAGVI 178

Query: 176 SEKTIENFAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDL 235
           +E+ IE    V A QV   L    D +V I IP +   +      A   L + P  +   
Sbjct: 179 TERNIEVGQVVAAGQVAYQLAIDGDRDVVIGIPEQTTSAIKVGQTAWVTLWSQPQARLAA 238

Query: 236 KLRTYSTQPSSD-SQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTAL 294
            +R  S  P++D S+T+ V +   +     +  G SA+V     +P     ++++PL++ 
Sbjct: 239 YVREIS--PAADESRTFKVKVALREGPS-AIQLGQSARVFFDYSQP----NVLSVPLSS- 290

Query: 295 VPDNQGKQFVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
           V  ++ + ++WV+    +  K  V +G   +D V +   LK G+ V+I GV  + +   +
Sbjct: 291 VSAHEKQPYIWVLQQDQRIHKVPVQLGAYGRDSVPVLSGLKAGDWVVIGGVHLLHDKQRI 350

Query: 355 RPYTDNN 361
            P   NN
Sbjct: 351 HPVDRNN 357