Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 83/347 (23%), Positives = 160/347 (46%), Gaps = 33/347 (9%)

Query: 225 LALLFTQQRLDIVTKSLRSVVGIADQFEIETADYKRQ----------IFQVTGSITQDLL 274
           +A LFT   L++V         I   F     + KR+          I+ +  S    ++
Sbjct: 2   IAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHAVQFLIYTIIISAVGSII 61

Query: 275 NTQVVFSIVRHWSNSLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRTVVRSAVNSKN 334
           N  +    ++  +  +++++ ++ +  +  + +FLLI    K   K  R +  + + S+ 
Sbjct: 62  NYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSRI 121

Query: 335 IRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNF 394
           I+I+             ++ V+ +L G    G++L+ +LT  GI G+ +G A +D LSNF
Sbjct: 122 IKIT-------------IIVVLVLLYG-EHFGMSLSGLLTFGGIGGLAVGMAGKDILSNF 167

Query: 395 AAGMMLLIYRPFDVGDFVHA--GGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIK 452
            +G+ML   RPF +GD++ +    ++G V+ +    T I TFDN+ + VPNS      ++
Sbjct: 168 FSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVE 227

Query: 453 NVTHERIRRVDMVFGIGYSDDLLKAEAV--LTDIVKSHPAVLKTPEPNIKVHTLNTSSID 510
           N      RR+    G+ Y D       V  + +++K+HPA+ +     +  +    SS++
Sbjct: 228 NPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLN 287

Query: 511 FIVRPWVKTDDYWDVYWDVTKEVKLRF----DREGISIPFPQQDVHL 553
            +V  + KT   W  +    ++V L+        G    FP Q +++
Sbjct: 288 IMVYCFTKT-TVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYM 333