Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

 Score =  120 bits (300), Expect = 9e-32
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 4/267 (1%)

Query: 287 SNSLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFV 346
           + +L + L   AV + FQ+   ++I L     A     +V + + S+NI I+  +  F  
Sbjct: 7   AQALYDTLVEFAVTYSFQIVGAIIIFLLGWWVANKIGHIVENLMVSRNIDIT--LSRFTG 64

Query: 347 SMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPF 406
             S  VV  I I++ L  +G+++ P++   G  G+  G A+Q  L+N+AAG  ++I RPF
Sbjct: 65  GASKLVVLGIVIIIALGNVGISVTPLIAAVGAVGLGAGLAIQGMLANYAAGFTIIITRPF 124

Query: 407 DVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVF 466
            VGD +   GV G V+ + L  T +   DN  I +PN  I G+++ N     +  +++  
Sbjct: 125 VVGDTIRVRGVAGVVAQVMLPYTILIDEDNVHIQIPNKLIVGEILHNSAENML--IELEI 182

Query: 467 GIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVY 526
           G+ YS  + +   V+   V++   V +   P I V     SSI+F +R W     +++V 
Sbjct: 183 GVAYSSKVDEVIDVIRKAVETVDGVSEEKSPAIGVDNFGDSSINFGIRVWAPAVRHFEVR 242

Query: 527 WDVTKEVKLRFDREGISIPFPQQDVHL 553
           + + + +     +  I IPFPQ++V +
Sbjct: 243 YALNQAIFNALQQHDIEIPFPQREVRM 269