Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

 Score =  182 bits (462), Expect = 1e-50
 Identities = 91/214 (42%), Positives = 131/214 (61%)

Query: 341 MQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMML 400
           +  F   +   V+ V+ ++   S IG+     +   G AG+ IG ALQ +L+NFA G+++
Sbjct: 61  LNKFLCGLISAVLKVMLLISVASMIGIETTSFIAVVGAAGLAIGLALQGSLANFAGGVLI 120

Query: 401 LIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIR 460
           LI++PF VGD + A G  G VS + ++ T + TFDN+ I++PN  +    + NV+    R
Sbjct: 121 LIFKPFKVGDTIEAEGHLGSVSEIQILYTVLNTFDNKRIVIPNGSLSNATLINVSVYDKR 180

Query: 461 RVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTD 520
           R DM FGIGY DD+ KA+ VL  + +     L  P P I V  L  +S+D + RPWV TD
Sbjct: 181 RCDMTFGIGYDDDIDKAKKVLQRLFEEDERSLTDPAPRICVGGLGDNSVDLMFRPWVATD 240

Query: 521 DYWDVYWDVTKEVKLRFDREGISIPFPQQDVHLH 554
           D W  YWD+ ++VK  FD EGISIP+PQ+DVHL+
Sbjct: 241 DLWPYYWDMQEKVKKAFDEEGISIPYPQRDVHLY 274