Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

 Score =  129 bits (324), Expect = 2e-34
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 11/247 (4%)

Query: 306 FIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQI 365
           FI +   + AK    V   ++R    S+ I           S+   +V + GI + L  +
Sbjct: 36  FIAIAFGIIAKVVGNVAGKIMRRTFESRQIA------SLLTSIIKSIVLIAGIFIALDFV 89

Query: 366 GLN--LAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSH 423
           GL   +  +L G GI G+ IGFA QD   NF AG+ + I +PF++GD + A GV G V  
Sbjct: 90  GLKGTVTSLLAGAGIVGLAIGFAFQDMTENFIAGVAMGIRKPFEIGDVIEAEGVFGNVKE 149

Query: 424 MSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTD 483
           ++L NT + TF  Q+ ++PN  ++ +++ N ++   RR+++  GI Y+DD+ +A  V+TD
Sbjct: 150 INLRNTLVETFYGQLEVIPNKILFRNILTNYSYLGYRRIEVPVGISYADDIEEAAKVITD 209

Query: 484 IVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVK---TDDYWDVYWDVTKEVKLRFDRE 540
            +     V+K  E  +   +   SSI+ ++  W++      +  V  D    VK   +  
Sbjct: 210 AMNEKDYVIKKEETAVYAESFGDSSINLLLWFWIRYPGEPGFMVVRHDAISTVKTVLEEN 269

Query: 541 GISIPFP 547
            I IPFP
Sbjct: 270 DILIPFP 276