Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

 Score =  106 bits (264), Expect = 2e-27
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 6/237 (2%)

Query: 287 SNSLVNWLASNAVQHLFQLFIFLLILLA-AKGGAKVTRTVVRSAVNSKNIRISHLMQDFF 345
           + SL++ L  N V  L  L + L+I+ A       + + +V+    +     S L++   
Sbjct: 49  AQSLLSQLWENFVYRLPGLALGLVIMAAFILLAPHIAKVLVKPLTRTTT---SPLLRSVI 105

Query: 346 VSMSGKVVWVIGILVGLSQIGLN--LAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIY 403
                 V+ ++GI + L   GL      V++G G+ G+I+GFA +D   NF + ++L I 
Sbjct: 106 QRSVSLVLILLGIYLFLFLAGLTGFAIAVVSGTGVVGLILGFAFRDIAENFISSLLLTIQ 165

Query: 404 RPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVD 463
           RPF +GD V      G +  ++   TT+  FD   I +PN+ I+  VIKN+T   + R  
Sbjct: 166 RPFRIGDIVQINDFTGIIQKVTARATTLVDFDGNHIQIPNATIYKGVIKNLTANPLMRGQ 225

Query: 464 MVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTD 520
            V G+GY  D+ +A+ +  +I  +   VL  PEP I +  L  S+ +  V  WV  +
Sbjct: 226 FVIGVGYDADIQQAQQIAQEITSAQDNVLIDPEPQILIDELGPSTYNIKVYFWVDVE 282