Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Small-conductance mechanosensitive channel from Alteromonas macleodii MIT1002

 Score =  111 bits (278), Expect = 4e-29
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 13/222 (5%)

Query: 355 VIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHA 414
           V+ IL+ LS +G+++ P++   GI  + +  ALQ TL NF +G+ L++ +P  +GDF+  
Sbjct: 143 VLAILIILSTMGVSVTPIVASLGITSLAVALALQPTLENFFSGIQLVMDKPIRIGDFIEL 202

Query: 415 -GGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTH-ERIRRVDMVFGIGYSD 472
             G  G V  +   +T +R   N I+I+PNSK+    + N  + ER   V +  G+ YS 
Sbjct: 203 DSGEQGFVEKIGWRSTWVRMLPNNIVIMPNSKLSNSKLINYYYPERELSVPVEVGVHYSS 262

Query: 473 DLLKAEAVLTD----IVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYW- 527
           DL   E V  +    I++ H   ++T +P +  HT + SSI+  V   ++T +Y++ ++ 
Sbjct: 263 DLEHVENVCLEVANTILEQHEFGVETYQPFVLFHTFDNSSINLTV--MLRTREYFNRFFI 320

Query: 528 --DVTKEVKLRFDREGISIPFPQQDVHLHLVDQKAFIPPTQP 567
                K +K RFD EGI IPFP     L+L  + A   PT P
Sbjct: 321 KSAFIKMLKKRFDEEGIVIPFP--ITALNLEQEGAANLPTAP 360