Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  119 bits (297), Expect = 8e-31
 Identities = 145/555 (26%), Positives = 232/555 (41%), Gaps = 78/555 (14%)

Query: 82  DPYHGWQ-ANYQILPGKEKVVAE---------LQKLAKDADSVYLATDLDREGEAIAWHL 131
           + Y  W  A+  I+P K K+  +         +++L  +A  + +ATD DREGE IA   
Sbjct: 54  EKYKRWVLADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIA--- 110

Query: 132 REIIGGDEKRYK----RVVFNEITKNAIQQAFK--QPGELNMDGVNAQQARRFMDRVVGF 185
           RE++  +  RY+    R+  + +   +I++A    +PG       ++   R   D ++G 
Sbjct: 111 RELV--EHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGM 168

Query: 186 MVSPLLWKKVARG-----LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINAD------T 234
            +S L      +      L  GRVQ+  ++L+V+R+R I  FVP  +W I+ D      T
Sbjct: 169 NMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERIT 228

Query: 235 LTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFIT 294
            TA  +          G    P  +    AA A  N A   + K   +        PF  
Sbjct: 229 FTAQWRAAE-DACDDQGRCLDP--QLARDAADAMRNAATARLVKLRTERMREVAPLPFDL 285

Query: 295 STLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNL----SAEAVENL----RG 345
            TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L     +EA + L    R 
Sbjct: 286 GTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARA 345

Query: 346 YITKHYGEAYLPSQPNVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQ 405
               +    ++ +Q            AH  I P   T    D+  +      +Y LI  +
Sbjct: 346 DAAVNELMPHIETQRRSRAWNDAKVSAHHGIIP---TGAGKDVGQLTGKHRAVYTLIRAR 402

Query: 406 FVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTR----VQRPLGKNE---DQILP 458
           ++A  +   +YD T      A   L+A G+++   GW R       P    E    Q LP
Sbjct: 403 YLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALP 462

Query: 459 PVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKEL-----------------EKRGIGRP 501
            +  G    +  ++ K  +T+PP  +TE  L+K +                 +  GIG  
Sbjct: 463 ALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTE 522

Query: 502 STYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIA 561
           +T A II  + DRGY+  + +   A      + D +     D      TA  E+ LD + 
Sbjct: 523 ATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIAD---PGTTAIWEQALDMVQ 579

Query: 562 EGEVNWTAVLDEFFA 576
            GE++    L+EF A
Sbjct: 580 SGEMS----LEEFVA 590