Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (266), Expect = 3e-27
 Identities = 133/524 (25%), Positives = 223/524 (42%), Gaps = 61/524 (11%)

Query: 91  YQILPGKE--KVVAELQKLAKDADSVYLATDLDREGEAIAWHLRE---IIGGDEKRYKRV 145
           +Q+ P K   + +  ++KL K+A  +  A D DREG+ +   + +   +    ++  +R+
Sbjct: 74  WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRL 133

Query: 146 VFNEITKNAIQQAF---KQPGELNMDGVNAQQARRFMDRVVGFMVS---PLLWKKVARG- 198
           + +++  +A+++A    +   E     V+A  AR   D + G  +S    LL KK     
Sbjct: 134 LISDLNLSAVKRALQGLRSNREFIPLSVSAL-ARSRADWLYGMNMSRAYTLLGKKAGYQG 192

Query: 199 -LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINA-DTLTADKQDFRLLVAQKDGLAFKP 256
            LS GRVQ+  + L+V R+ EI+ F+P +++ ++A        + F +    K   A  P
Sbjct: 193 VLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLP 252

Query: 257 VNETEALA--------AVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYG 308
             + E             + +      V + E   T      P+  S LQ  A+ R  + 
Sbjct: 253 WQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFS 312

Query: 309 VKKTMMLAQRLYEA-GYITYMRTDSTNLSAE----------AVENLRGYITKHYGEAYLP 357
            ++ + L Q LYE    ITY R+D   L  E          A+ N    +     +A L 
Sbjct: 313 AQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLS 372

Query: 358 SQPNVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYD 417
            +   +   +   +AH AI P+    + + L G E    K+Y LI  Q++      A Y 
Sbjct: 373 LRSKAWNDSK--VDAHHAIIPTPKKASVNALSGHEM---KVYQLIARQYLMQFYPAAIYA 427

Query: 418 STTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQI--LPPVKVGDSLKLVSLDPKQ 475
              +    A     AKGR L   GW  +     + E+ +  +PP+ VG  L+    + KQ
Sbjct: 428 EAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQ 487

Query: 476 HFTKPPARYTEAALV------------KELEK-----RGIGRPSTYASIISTIQDRGYVK 518
             T+PP  +TEA L+            KEL+K      G+G  +T A I+ T+  RG ++
Sbjct: 488 RQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQ 547

Query: 519 VDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAE 562
            D +   +   G  +   L     +    D TA  E +L  IAE
Sbjct: 548 RDNKLIKSTPAGRGLIHALP---SEATYPDMTAHWEHQLQAIAE 588