Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 815 a.a., DNA topoisomerase III from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  158 bits (399), Expect = 1e-42
 Identities = 150/521 (28%), Positives = 232/521 (44%), Gaps = 63/521 (12%)

Query: 96  GKEKVVAELQKLAKDADSVYLATDLDREGEAIA-WHLREIIGGDEKRYKRVVFNEITKNA 154
           G +K    +++L   A+ V    D  +EGE I  W L E      K +KR+  + +T+ A
Sbjct: 80  GVQKQFKIIKQLLDKAEEVINCGDAGQEGEVIQRWVLTE--AKYRKPFKRLWISSLTEEA 137

Query: 155 IQQAFKQPGE-LNMDGV-NAQQARRFMDRVVGFMVSPLLWKKVARG----LSAGRVQSVA 208
           I+Q F +  E    D +  A ++R   D ++G   + L   K A G    LS GRVQ+  
Sbjct: 138 IRQGFAKLREGAEFDSLYQAGKSRAIGDWLLGLNATRLFTLKYANGSRQTLSIGRVQTPT 197

Query: 209 VKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAA 268
           + +LV R  EI  FVP+ FW++   TL  D        +  +G   K   E EAL  + A
Sbjct: 198 LAMLVNRHHEIANFVPQPFWELK--TLYRDTT-----FSSTNGRFQK---EEEALKIMEA 247

Query: 269 LNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYITYM 328
           + +A+  +   E K  T  P   F  ++LQ   + +L     +T+   Q LYE   ++Y 
Sbjct: 248 IREAELTITDVETKKGTEAPPKLFDLTSLQIECNNKLSLSADETLKTVQSLYEKKVVSYP 307

Query: 329 RTDSTNLSAEAVENLRGYI--TKHYGEAYLPSQPNVYGS-----KQNAQEAHEAIRPSDV 381
           R D+T L  +    + G +    +Y +   P   N           N    H AI P+  
Sbjct: 308 RVDTTFLPDDIYPKIPGILQGLSNYSQEVAPLLQNKIRKTKKVFNNNKVTDHHAIIPTG- 366

Query: 382 TVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDG 441
              A  L G EAD   +Y +I  +F+A         +TTV  ++A YT K +G+ +   G
Sbjct: 367 -AAAGGLYGREAD---VYDIITRRFIAAFYPDCIVSNTTVMAESAGYTFKVRGKQILDPG 422

Query: 442 WTRV-------QRPLGKNEDQ------ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAA 488
           W  +         P GK+  +      +LP  + G+      L  K+  T PP  YTEA 
Sbjct: 423 WRVIYGAEDVKSEPTGKDAKEEEEAAGVLPHFEKGEHGPHEPLLEKK-MTNPPKEYTEAT 481

Query: 489 LVKELE----------------KRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEI 532
           L++ +E                + GIGRPST A+II T+  R Y++ D+++    +MG  
Sbjct: 482 LLRAMETAGKQVEDEELKDALKENGIGRPSTRAAIIETLFKRQYIRKDKKKIVPTQMGID 541

Query: 533 VTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDE 573
           +   +    + L + + T + E KL QI  GE    A L E
Sbjct: 542 LIGVIRN--ETLKSAEMTGQWERKLRQIEGGEFKAEAFLQE 580