Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score =  445 bits (1144), Expect = e-129
 Identities = 274/683 (40%), Positives = 388/683 (56%), Gaps = 80/683 (11%)

Query: 5   LVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTDKE 64
           +V+VESPAKAKTINKYLG DF V +S GH+RDLP                          
Sbjct: 3   VVVVESPAKAKTINKYLGSDFHVLASYGHIRDLPP------------------------- 37

Query: 65  QQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREG 124
                       K   V P  G+  +++  P  E+ + E+    K AD ++LATD DREG
Sbjct: 38  ------------KDGSVRPDEGFAMDWETDPKSERQIKEIVAAVKGADKLFLATDPDREG 85

Query: 125 EAIAWHLREIIGGDEK----RYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           EAI+WH+R+++   +       KRVVFNEITK+A+  A + P E++ + V+A  ARR +D
Sbjct: 86  EAISWHVRQVLEARKALKGVEVKRVVFNEITKSAVLDAMRNPREIHQELVDAYLARRALD 145

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
            +VGF +SP+LW+K+    SAGRVQSVA++L+ ERE EI++F P E+W I AD LT    
Sbjct: 146 YLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIESFKPREYWTIAADFLTPKG- 204

Query: 241 DFRLLVAQKDGLAFKPVNE----TEALA--AVAALNKAQYEVCKREDKPTTSKPSAPFIT 294
              LL A    L  K +++    +EALA  A +    A+Y V   E K T   P  PF T
Sbjct: 205 --ALLSAGLTHLGGKKLDKFDLSSEALARDAESKAASARYAVAAVERKRTRRNPYPPFTT 262

Query: 295 STLQQAASTRLGYGVKKTMMLAQRLYE--------AGYITYMRTDSTNLSAEAVENLRGY 346
           STLQQ AS +L +   +TM LAQRLYE         G ITYMRTD   ++AEA+   R  
Sbjct: 263 STLQQEASRKLYFAAARTMQLAQRLYEGVDIGGETVGLITYMRTDGVQMAAEAIAGARAV 322

Query: 347 ITKHYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDL-EGMEADAHKLYALIWN 404
           I + +G+ Y+P  P VY +K +NAQEAHEAIRP+D+    +D+   ++ D  +LY LIW 
Sbjct: 323 IAQDFGKVYVPEAPRVYKTKAKNAQEAHEAIRPTDLARRPEDVARYLDKDQLRLYELIWK 382

Query: 405 QFVACQMTPAQYDSTTVSVKAAEY--TLKAKGRILKFDGWTRVQRPLGKNED-----QIL 457
           + +A QM  A+ D   V +   ++    +A G ++ FDG+ +V R    + D     ++L
Sbjct: 383 RTLASQMAAAELDQVGVDIAGDQHGIVFRATGSVVVFDGFLKVYREDKDDSDDEDAEKLL 442

Query: 458 PPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYV 517
           P V   D++   ++  +QHFT+PP R++EA+LVK +E+ GIGRPSTYASI+S +Q+R YV
Sbjct: 443 PDVTEKDAMDRKAMRTEQHFTQPPPRFSEASLVKRMEELGIGRPSTYASILSVLQERNYV 502

Query: 518 KVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFAD 577
           ++DQRRF  E  G +VT  L+  F   + Y+FTA +E +LD ++ G  +W  VLD F+ D
Sbjct: 503 RLDQRRFIPEDRGRLVTAFLESFFGRYVEYNFTADLENQLDDVSGGRDDWRKVLDRFWRD 562

Query: 578 FS------RDLETAEQDESLGGMKPNHIVMTN------ILCPTCSR-PMGIRTASTGVFL 624
           FS      +DL  A+  ++L  +   H    N        CPTC+   + ++    G F+
Sbjct: 563 FSGAVDETKDLRVAQVLDALDELLGPHFFPDNGTGHDPRSCPTCNAGRLSLKLGKFGAFI 622

Query: 625 GCSGYGLPPKERCKTTINLGDEE 647
           GCS Y      R  TT   G+EE
Sbjct: 623 GCSAYPECRFTRPLTTGGEGEEE 645



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 717 CDKCGSDMV-LKNGRFGKYMGCT-NDACKNTRKILKNGE-VAPPKEEPVHFPELPCENSD 773
           C  C +  + LK G+FG ++GC+    C+ TR +   GE     +E P      P   S 
Sbjct: 603 CPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGEGEEEVREGPKELGNDP--ESG 660

Query: 774 AYFVLRDGASGLFFAASNFPKSRETRAPLVEELKR 808
               LR G  G +    +    +   AP+ E+ K+
Sbjct: 661 LPVTLRKGPYGHYVQLGDETTLKAEPAPVPEKGKK 695