Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., Similar to C-terminal Zn-finger domain of DNA topoisomerase I from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 44.3 bits (103), Expect = 6e-09
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 717 CDKCGSDMVLKNGRFGKYMGCTN-DACKNTR--KILKNGEVAPPKEEPVHFPELPCENSD 773
           C +CG+++V+++G+ G ++GC+    C   R  K   +G +    E  +      C    
Sbjct: 15  CPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQADGHIVKILEGQL------CPECG 68

Query: 774 AYFVLRDGASGLFFAASNFPKSRET 798
           A  VLR G  G+F   S +P+   T
Sbjct: 69  AVLVLRQGRFGMFIGCSQYPQCEHT 93



 Score = 37.4 bits (85), Expect = 7e-07
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 689 CGNNPNCEGFIVEEGEFKVKGYEGPTVE---CDKCGSDMVLKNGRFGKYMGCTN-DACKN 744
           C   P C+   V   + +  G+    +E   C +CG+ +VL+ GRFG ++GC+    C++
Sbjct: 35  CSRYPECD--YVRPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEH 92

Query: 745 TRKILKNGEVA 755
           T  I K  E A
Sbjct: 93  TVVIDKPDETA 103



 Score = 34.3 bits (77), Expect = 6e-06
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 23/136 (16%)

Query: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVET 659
           V  N  CP C   + IR+   G FLGCS Y  P  +  +   +  D   ++ +LE  +  
Sbjct: 9   VRKNEPCPQCGAELVIRSGKHGPFLGCSRY--PECDYVRPLKSQADGH-IVKILEGQL-- 63

Query: 660 AALRAKKRCPICETAMDAYLIDDKRKLHV-CGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
                   CP C   +   L   +  + + C   P CE  +V      +   +   + C 
Sbjct: 64  --------CPECGAVL--VLRQGRFGMFIGCSQYPQCEHTVV------IDKPDETAIACP 107

Query: 719 KC-GSDMVLKNGRFGK 733
            C    +V +  R+GK
Sbjct: 108 ACQQGHLVQRRSRYGK 123



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 768 PCENSDAYFVLRDGASGLFFAASNFPK 794
           PC    A  V+R G  G F   S +P+
Sbjct: 14  PCPQCGAELVIRSGKHGPFLGCSRYPE 40