Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., DNA topoisomerase III from Erwinia tracheiphila SCR3

 Score =  101 bits (252), Expect = 1e-25
 Identities = 132/539 (24%), Positives = 216/539 (40%), Gaps = 81/539 (15%)

Query: 87  WQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-GDEKRYK-- 143
           WQ   Q  P   K +  ++ L   A  V  A D DREG+ +   + + +    EKR K  
Sbjct: 73  WQL--QPRPSVAKQLGVIKGLLAQASEVIHAGDPDREGQLLVDEVLDYLTLSPEKRGKVL 130

Query: 144 RVVFNEITKNAIQQAFKQPGELN-----------------MDGVNAQQARRFMDRVVGFM 186
           R + N++   A+++A  +  E                   + G+N  +A   + R  G+ 
Sbjct: 131 RCLINDLNPAAVERAVARLRENREFIPLCVSALARARADWLYGINMTRAYTLLGRNAGY- 189

Query: 187 VSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLV 246
                       LS GRVQ+  + L+V R+ +I+ F+ ++F+++ A  +T   Q+ R + 
Sbjct: 190 ---------DGVLSVGRVQTPVLGLVVRRDEDIENFIAKDFFEVKAHIVTP--QNERFVA 238

Query: 247 AQKDGLAFKPVNETE--------ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQ 298
             +   + +P  + E        A   V  +N     V    D+     P  PF  S LQ
Sbjct: 239 HWQPSESCEPYQDEEGRLLHRPLAEHVVTRINGQPAWVISYNDRRENETPPLPFSLSGLQ 298

Query: 299 QAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAEAVEN---LRGYITKHYGEA 354
             A+ R G   +  +   Q+LYE    ITY R+DS  L  E       +   I+ H  E 
Sbjct: 299 IEAAKRFGLSAQTVLDTCQKLYETHKLITYPRSDSRYLPEEHYAGRHAVLNAISAHQPEL 358

Query: 355 YLPSQPNVYGSKQN------AQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVA 408
             P+  +  G ++N        +AH AI P+       +   +  +   +Y LI  Q++ 
Sbjct: 359 TYPA--DFDGDRKNRCWDDKKVDAHHAIIPT----ARSNPARLSENERNIYYLIARQYLM 412

Query: 409 CQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRV---QRPLGKNEDQILPPVKVGDS 465
                A Y    + +  A     AK R L   GW  +   +    +N+   LP V  GD 
Sbjct: 413 QFCQEAVYRKCVIGLDIAGGKFVAKARFLAEAGWRALLGGKERDEENDGTPLPVVAKGDE 472

Query: 466 LKLVSLDPKQHFTKPPARYTEAALV------------KELEK-----RGIGRPSTYASII 508
           L     +     T+PP  +T+A+L+            KEL+K      G+G  +T A II
Sbjct: 473 LLCERGEVAAKQTQPPRPFTDASLLSAMTGIARFVQDKELKKVLRATDGLGTEATRAGII 532

Query: 509 STIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNW 567
             +  R ++    R   +   G  +   L E        D TA  E  L +I+E E ++
Sbjct: 533 ELLFKRTFLFKKGRYIHSSPAGRALIHSLPEM---AARPDMTAHWESTLTKISEKECSY 588