Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Enterobacter asburiae PDN3

 Score = 99.4 bits (246), Expect = 6e-25
 Identities = 127/529 (24%), Positives = 216/529 (40%), Gaps = 75/529 (14%)

Query: 95  PGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-GDEKRYK--RVVFNEIT 151
           P   K +  +++   +A  +  A D DREG+ +   + + +    EKR +  R + N++ 
Sbjct: 79  PSVTKQLNVIKRFLHEAAEIVHAGDPDREGQLLVDEVLDYLELAPEKRQQVQRCLINDLN 138

Query: 152 KNAIQQAFKQPGELN-----------------MDGVNAQQARRFMDRVVGFMVSPLLWKK 194
             A+++A  +    +                 + G+N  +A   + R  G+         
Sbjct: 139 PQAVERAISRLRANSEFIPLCVSALARARADWLYGINMTRAYTILGRNAGYQGV------ 192

Query: 195 VARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAF 254
               LS GRVQ+  + L+V R+ +I+ FV ++F+++ A  +T   + F  +    D    
Sbjct: 193 ----LSVGRVQTPVLGLVVRRDEDIENFVAKDFFEVKAHIVTPKDERFTAVWQPSDACES 248

Query: 255 KPVNETEALAAVAA---LNKAQYE---VCKREDKPTTSKPSAPFITSTLQQAASTRLGYG 308
               E   L    A   +N+   +   V    DK  +     PF  S LQ  A+ + G  
Sbjct: 249 YQDEEGRLLHRPLADHVVNRITGQPAIVTSYNDKRESEPAPLPFSLSALQIEAAKKFGLS 308

Query: 309 VKKTMMLAQRLYEA-GYITYMRTDSTNLSAE---AVENLRGYITKHYGEAYLPSQPNVYG 364
            +  + + Q+LYE    ITY R+DS  L  E      ++   I  H  +  L  QP V  
Sbjct: 309 AQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHSVMNAIGVHAPD--LLPQPAVNP 366

Query: 365 SKQN------AQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDS 418
              N        +AH AI P   T  A  +   + +A K+Y LI  Q++      A +  
Sbjct: 367 DTHNRCWDDKKVDAHHAIIP---TARASSVNLTDNEA-KVYNLIARQYLMQFCPDAVFRK 422

Query: 419 TTVSVKAAEYTLKAKGRILKFDGWTRV---QRPLGKNEDQILPPVKVGDSLKLVSLDPKQ 475
             + ++ A+    AK R L   GW  +   +    +N+   LP V   D L     +  +
Sbjct: 423 CVIELEIAKGKFVAKARFLAEAGWRTLLGNKERDEENDGTPLPVVAKDDELLCEKGEVVE 482

Query: 476 HFTKPPARYTEAALV------------KELEK-----RGIGRPSTYASIISTIQDRGYVK 518
             T+PP  +T+A L+            K+L+K      G+G  +T A II  +  RG+++
Sbjct: 483 RQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLE 542

Query: 519 VDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNW 567
              R   + + G  +   L E        D TA  E  L QI+E +  +
Sbjct: 543 KKGRYIHSTEPGRALIHSLPEL---AARPDMTAHWESVLTQISEKQCRY 588