Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., DNA topoisomerase I, bacterial from Enterobacter asburiae PDN3

 Score = 1241 bits (3210), Expect = 0.0
 Identities = 610/871 (70%), Positives = 719/871 (82%), Gaps = 14/871 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60
           MGK+LVIVESPAKAKTINKYLG D++VKSSVGH+RDLPT+G          +AS K A +
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSG----------SASKKSADS 50

Query: 61  TDKEQQKREK--ERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLAT 118
           T  +  K+ K  ER+AL+ +MGV+P+H W A Y++LPGKEKVV EL++LA+ AD +YLAT
Sbjct: 51  TSTKGAKKPKKDERSALVNRMGVNPWHNWDAQYEVLPGKEKVVNELKQLAEKADHIYLAT 110

Query: 119 DLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRF 178
           DLDREGEAIAWHLRE+IGGD+KRY RVVFNEITKNAI+QAF++PGELN+D VNAQQARRF
Sbjct: 111 DLDREGEAIAWHLREVIGGDDKRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRF 170

Query: 179 MDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTAD 238
           MDRVVG+MVSPLLWKK+ARGLSAGRVQSVAV+L+VEREREIKAFVPEEFW+++A+  T  
Sbjct: 171 MDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANVTTPG 230

Query: 239 KQDFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQ 298
                L V+  +   F+P N  + +AAVA L KA+Y+V +REDKPT+SKP APFITSTLQ
Sbjct: 231 GDALPLQVSHHNDKPFRPENRDQTMAAVALLEKARYKVLEREDKPTSSKPGAPFITSTLQ 290

Query: 299 QAASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPS 358
           QAASTRLGYGVKKTMM+AQRLYEAGYITYMRTDSTNLS +AV  +RGYI+ ++G+ YLP 
Sbjct: 291 QAASTRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPE 350

Query: 359 QPNVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDS 418
             N Y SK+N+QEAHEAIRPSDV+V A+ L+ MEADA KLY LIW QFVACQMTPA+YDS
Sbjct: 351 SANQYASKENSQEAHEAIRPSDVSVLAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDS 410

Query: 419 TTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGK-NEDQILPPVKVGDSLKLVSLDPKQHF 477
           TT++V A ++ LKA+GRIL+FDGWT+V   L K +ED+ LP V  GD L LV L P QHF
Sbjct: 411 TTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDELSLVDLVPAQHF 470

Query: 478 TKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRL 537
           TKPPAR++EA+LVKELEKRGIGRPSTYASIISTIQDRGYV+V+ RRF+AEKMGEIVTDRL
Sbjct: 471 TKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRL 530

Query: 538 DENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPN 597
           + NF +LMNYDFTA+ME+ LDQ+A  +  W  VLD FF+DF+  LE AE+D   GGM PN
Sbjct: 531 EANFRELMNYDFTAQMEDSLDQVASHQAEWKKVLDSFFSDFTDQLEKAEKDPEEGGMLPN 590

Query: 598 HIVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLE-ED 656
            +V+T+I CPTC R MGIRTA+TGVFLGCSGY L PKERCKTTINL  E  V+NVLE +D
Sbjct: 591 QMVLTSIDCPTCGRKMGIRTATTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDD 650

Query: 657 VETAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVE 716
            ET ALRAK+RC  C TAMD+YLID KRKLHVCGNNP C+G+ +EEGEF++KGY+GP VE
Sbjct: 651 AETNALRAKRRCKKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVE 710

Query: 717 CDKCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYF 776
           C+KCGS+M LK GRFGKYM CTND CKNTRKIL+NGEVAPPKE+PV  PELPCE SDAYF
Sbjct: 711 CEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYF 770

Query: 777 VLRDGASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVR 836
           VLRDGA+G+F AA+ FPKSRETRAPLVEEL RF +RLPEK +YL  AP  DP+G   VVR
Sbjct: 771 VLRDGAAGVFLAANTFPKSRETRAPLVEELHRFRDRLPEKLRYLADAPQQDPEGNKTVVR 830

Query: 837 FSRKEKEHYVRTETEGKPSGWMAVYQEGKWL 867
           FSRK K+ YV  E EGK +GW A + +GKW+
Sbjct: 831 FSRKTKQQYVAAEKEGKATGWSAFFVDGKWV 861