Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., Uncharacterized protein YrdD from Escherichia coli ECRC62

 Score = 50.4 bits (119), Expect = 8e-11
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 717 CDKCGSDMVLKNGRFGKYMGCTN-DACKNTR--KILKNGEVAPPKEEPVHFPELPCENSD 773
           C KCG+++V+++G+ G ++GC+   AC   R  K   +G +    E  V      C    
Sbjct: 15  CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV------CPACG 68

Query: 774 AYFVLRDGASGLFFAASNFPKSRET 798
           A  VLR G  G+F   SN+P+   T
Sbjct: 69  ANLVLRQGRFGMFIGCSNYPECEHT 93



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 707 VKGYEGPTVECDKCGSDMVLKNGRFGKYMGCTN-DACKNTRKILKNGEVA 755
           VK  EG    C  CG+++VL+ GRFG ++GC+N   C++T  I K  E A
Sbjct: 56  VKVLEGQV--CPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDETA 103



 Score = 37.0 bits (84), Expect = 9e-07
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 23/136 (16%)

Query: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVET 659
           V  N  CP C   + IR+   G FLGCS Y  P  +  +   +  D   ++ VLE  V  
Sbjct: 9   VRNNESCPKCGAELVIRSGKHGPFLGCSQY--PACDYVRPLKSSADGH-IVKVLEGQV-- 63

Query: 660 AALRAKKRCPICETAMDAYLIDDKRKLHV-CGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
                   CP C    +  L   +  + + C N P CE   +      +   +   + C 
Sbjct: 64  --------CPAC--GANLVLRQGRFGMFIGCSNYPECEHTEL------IDKPDETAITCP 107

Query: 719 KCGS-DMVLKNGRFGK 733
           +C +  +V +  R+GK
Sbjct: 108 QCRTGHLVQRRSRYGK 123