Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 605/873 (69%), Positives = 723/873 (82%), Gaps = 8/873 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60
           MGK+LVIVESPAKAKTINKYLG DF+VKSSVGHVRDLPT+G + + + K+A A+ +KA  
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHVRDLPTSG-SGSASKKSAEANGEKAKK 59

Query: 61  TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL 120
             K+ +K      AL+ +MGVDPY GWQA+Y+ILPGKEKVV+EL+ LA++AD VYLATDL
Sbjct: 60  AVKKDEK-----TALVNRMGVDPYRGWQAHYEILPGKEKVVSELKALAQNADHVYLATDL 114

Query: 121 DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           DREGEAIAWHLREIIGGD+KR+ RVVFNEITKNAI+QAF+ PGELN++ VNAQQARRFMD
Sbjct: 115 DREGEAIAWHLREIIGGDDKRFSRVVFNEITKNAIRQAFENPGELNINRVNAQQARRFMD 174

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
           RVVG+MVSPLLWKK+ARGLSAGRVQSVAV+L+VEREREIKAFVPEE+W+++AD L   + 
Sbjct: 175 RVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELHADLLANPEI 234

Query: 241 DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA 300
             ++ V   +G  F+PVN+ +  AAV+ L KA+Y V +REDKPT+SKP APFITSTLQQA
Sbjct: 235 ALQMQVTHHNGKPFRPVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQA 294

Query: 301 ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP 360
           ASTRLG+GVKKTMM+AQRLYEAG+ITYMRTDSTNLS +A+   R YI   +G+ YLP  P
Sbjct: 295 ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMARDYIHDEFGKRYLPEAP 354

Query: 361 NVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTT 420
           N+Y SK+N+QEAHEAIRPSDV V AD L+ MEADA KLY LIW QFVACQM PAQYDSTT
Sbjct: 355 NLYTSKENSQEAHEAIRPSDVKVQADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTT 414

Query: 421 VSVKAAEYTLKAKGRILKFDGWTRVQRPLGK-NEDQILPPVKVGDSLKLVSLDPKQHFTK 479
           + V A +Y L+AKGR L+FDGWT+V   L K +ED+ LP + VG SL L  L P QHFTK
Sbjct: 415 LVVSAGDYQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPAIDVGQSLSLEKLSPSQHFTK 474

Query: 480 PPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDE 539
           PPARY+EA+LVKELEKRGIGRPSTYA+IISTIQDRGYV+V+ RRF+AEKMGEIVTDRL++
Sbjct: 475 PPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLED 534

Query: 540 NFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNHI 599
           NF +LMNYDFTARME +LD +A  +  W  VLDEFFA+FS+ LETAE + + GGMKPN +
Sbjct: 535 NFRELMNYDFTARMENRLDLVANSQAEWKGVLDEFFAEFSKQLETAELEPNDGGMKPNQM 594

Query: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLE-EDVE 658
           V+T+I CPTC R MGIRTASTGVFLGCSGY L PKERCKTTINL  E  V+NVLE ++ E
Sbjct: 595 VLTSIDCPTCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLIPEAEVLNVLEGDEAE 654

Query: 659 TAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
           T ALRA++RC  C TAMD+YLID++RKLHVCGNNP+C+G+ +E+GEF++KGY+GP VEC+
Sbjct: 655 TNALRARRRCSKCGTAMDSYLIDNQRKLHVCGNNPSCDGYEIEQGEFRLKGYDGPVVECE 714

Query: 719 KCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVL 778
           KC S+M LK GRFGKYM CTN++C NTRKIL+NGEVAPPKE+PV  PEL CE SDAYFVL
Sbjct: 715 KCSSEMHLKMGRFGKYMACTNESCGNTRKILRNGEVAPPKEDPVPLPELLCEKSDAYFVL 774

Query: 779 RDGASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVRFS 838
           RDGA+G+F AA+ FPKSRETRAPLV EL RF +RLPEK +YL  AP  D +G   +VRFS
Sbjct: 775 RDGAAGVFLAANTFPKSRETRAPLVAELVRFCDRLPEKLRYLAEAPVTDAEGNKTLVRFS 834

Query: 839 RKEKEHYVRTETEGKPSGWMAVYQEGKWLVTDK 871
           RK K+ YV +E EGK +GW A Y +GKW+ + +
Sbjct: 835 RKTKQQYVSSEKEGKATGWSAFYVDGKWVESSR 867